Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02926

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02925 and MPMX19_02926 are separated by 147 nucleotidesMPMX19_02926 and MPMX19_02927 are separated by 315 nucleotides MPMX19_02925: MPMX19_02925 - Hydrazine synthase subunit beta, at 180,009 to 180,983 _02925 MPMX19_02926: MPMX19_02926 - hypothetical protein, at 181,131 to 181,514 _02926 MPMX19_02927: MPMX19_02927 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 181,830 to 182,357 _02927 Position (kb) 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.343 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 181.151 kb on - strandat 181.512 kb on + strandat 181.573 kb on + strandat 181.573 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.610 kb on + strandat 181.610 kb on + strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.648 kb on - strandat 181.648 kb on - strandat 181.696 kb on + strandat 181.697 kb on - strandat 181.697 kb on - strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.731 kb on - strandat 181.731 kb on - strandat 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.254 kb on - strand, within MPMX19_02927at 182.445 kb on - strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.477 kb on - strandat 182.477 kb on - strandat 182.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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180,216 + MPMX19_02925 0.21 -0.2
180,216 + MPMX19_02925 0.21 +0.1
180,216 + MPMX19_02925 0.21 +1.9
180,216 + MPMX19_02925 0.21 +0.1
180,216 + MPMX19_02925 0.21 -0.2
180,216 + MPMX19_02925 0.21 +0.3
180,216 + MPMX19_02925 0.21 -0.2
180,216 + MPMX19_02925 0.21 -1.6
180,216 + MPMX19_02925 0.21 +0.2
180,216 + MPMX19_02925 0.21 -0.8
180,216 + MPMX19_02925 0.21 -0.2
180,217 - MPMX19_02925 0.21 -0.3
180,217 - MPMX19_02925 0.21 -0.3
180,217 - MPMX19_02925 0.21 -0.6
180,217 - MPMX19_02925 0.21 -1.3
180,217 - MPMX19_02925 0.21 -1.3
180,217 - MPMX19_02925 0.21 -0.5
180,217 - MPMX19_02925 0.21 +0.1
180,217 - MPMX19_02925 0.21 -1.3
180,217 - MPMX19_02925 0.21 -1.3
180,217 - MPMX19_02925 0.21 -0.2
180,217 - MPMX19_02925 0.21 +0.3
180,217 - MPMX19_02925 0.21 -0.1
180,342 + MPMX19_02925 0.34 +0.5
180,342 + MPMX19_02925 0.34 -0.3
180,342 + MPMX19_02925 0.34 +1.1
180,343 - MPMX19_02925 0.34 -0.5
180,411 - MPMX19_02925 0.41 -0.8
180,411 - MPMX19_02925 0.41 -0.2
180,811 - MPMX19_02925 0.82 -0.6
180,811 - MPMX19_02925 0.82 -0.1
180,870 + MPMX19_02925 0.88 -0.5
180,870 + MPMX19_02925 0.88 -1.5
180,870 + MPMX19_02925 0.88 -0.1
180,870 + MPMX19_02925 0.88 -2.6
180,870 + MPMX19_02925 0.88 -0.9
180,871 - MPMX19_02925 0.88 -1.1
180,871 - MPMX19_02925 0.88 +0.2
180,871 - MPMX19_02925 0.88 -0.8
181,151 - -1.8
181,512 + -0.2
181,573 + -0.3
181,573 + -0.3
181,608 + +0.6
181,608 + +0.3
181,608 + +0.8
181,608 + +1.1
181,608 + +1.3
181,608 + -0.7
181,608 + -1.9
181,609 - +0.2
181,609 - -0.1
181,609 - -0.8
181,609 - +0.0
181,609 - -0.7
181,610 + -0.8
181,610 + -0.4
181,611 - -0.3
181,611 - +0.4
181,611 - +1.1
181,648 - +0.3
181,648 - -0.1
181,696 + +0.5
181,697 - -0.5
181,697 - +0.0
181,730 + -0.7
181,730 + -0.0
181,730 + -0.4
181,731 - -0.0
181,731 - -1.1
182,247 + MPMX19_02927 0.79 +0.4
182,247 + MPMX19_02927 0.79 -0.6
182,247 + MPMX19_02927 0.79 +0.4
182,248 - MPMX19_02927 0.79 -1.3
182,248 - MPMX19_02927 0.79 -0.1
182,248 - MPMX19_02927 0.79 +0.8
182,248 - MPMX19_02927 0.79 -1.6
182,253 + MPMX19_02927 0.80 -1.1
182,253 + MPMX19_02927 0.80 -1.1
182,254 - MPMX19_02927 0.80 -0.8
182,445 - +0.5
182,476 + -0.8
182,476 + -0.7
182,476 + +2.1
182,476 + -1.3
182,477 - -0.6
182,477 - -0.8
182,477 - -0.3

Or see this region's nucleotide sequence