Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01011

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01010 and MPMX19_01011 are separated by 211 nucleotidesMPMX19_01011 and MPMX19_01012 are separated by 4 nucleotidesMPMX19_01012 and MPMX19_01013 overlap by 4 nucleotides MPMX19_01010: MPMX19_01010 - LexA repressor, at 1,051,687 to 1,052,412 _01010 MPMX19_01011: MPMX19_01011 - Molybdopterin molybdenumtransferase, at 1,052,624 to 1,053,853 _01011 MPMX19_01012: MPMX19_01012 - Cyclic pyranopterin monophosphate synthase, at 1,053,858 to 1,054,349 _01012 MPMX19_01013: MPMX19_01013 - putative N-acetyltransferase YsnE, at 1,054,346 to 1,054,855 _01013 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1051.691 kb on + strandat 1051.691 kb on + strandat 1051.692 kb on - strandat 1051.692 kb on - strandat 1051.750 kb on - strandat 1052.457 kb on - strandat 1052.457 kb on - strandat 1052.476 kb on - strandat 1052.520 kb on - strandat 1052.625 kb on + strandat 1052.625 kb on + strandat 1052.625 kb on + strandat 1052.625 kb on + strandat 1052.625 kb on + strandat 1052.626 kb on - strandat 1052.626 kb on - strandat 1052.626 kb on - strandat 1052.626 kb on - strandat 1052.626 kb on - strandat 1052.730 kb on + strandat 1052.730 kb on + strandat 1052.730 kb on + strandat 1052.730 kb on + strandat 1052.731 kb on - strandat 1052.731 kb on - strandat 1052.731 kb on - strandat 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.813 kb on + strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.814 kb on - strand, within MPMX19_01011at 1052.817 kb on + strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.818 kb on - strand, within MPMX19_01011at 1052.873 kb on + strand, within MPMX19_01011at 1052.873 kb on + strand, within MPMX19_01011at 1052.873 kb on + strand, within MPMX19_01011at 1053.090 kb on + strand, within MPMX19_01011at 1053.091 kb on - strand, within MPMX19_01011at 1053.091 kb on - strand, within MPMX19_01011at 1053.091 kb on - strand, within MPMX19_01011at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.970 kb on + strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1053.971 kb on - strand, within MPMX19_01012at 1054.316 kb on + strandat 1054.316 kb on + strandat 1054.316 kb on + strandat 1054.404 kb on + strand, within MPMX19_01013at 1054.404 kb on + strand, within MPMX19_01013at 1054.404 kb on + strand, within MPMX19_01013at 1054.404 kb on + strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.405 kb on - strand, within MPMX19_01013at 1054.413 kb on + strand, within MPMX19_01013at 1054.413 kb on + strand, within MPMX19_01013at 1054.413 kb on + strand, within MPMX19_01013at 1054.414 kb on - strand, within MPMX19_01013at 1054.414 kb on - strand, within MPMX19_01013at 1054.414 kb on - strand, within MPMX19_01013at 1054.446 kb on + strand, within MPMX19_01013at 1054.447 kb on - strand, within MPMX19_01013at 1054.447 kb on - strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on + strand, within MPMX19_01013at 1054.581 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.582 kb on - strand, within MPMX19_01013at 1054.602 kb on + strand, within MPMX19_01013at 1054.729 kb on - strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.743 kb on + strand, within MPMX19_01013at 1054.744 kb on - strand, within MPMX19_01013at 1054.744 kb on - strand, within MPMX19_01013

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,051,691 + +0.2
1,051,691 + -1.1
1,051,692 - -1.7
1,051,692 - -1.1
1,051,750 - +0.7
1,052,457 - +0.1
1,052,457 - -0.3
1,052,476 - +0.7
1,052,520 - -0.2
1,052,625 + -0.4
1,052,625 + -0.5
1,052,625 + +0.2
1,052,625 + +0.7
1,052,625 + -0.1
1,052,626 - -0.7
1,052,626 - -0.1
1,052,626 - -0.7
1,052,626 - +1.7
1,052,626 - -1.8
1,052,730 + +0.1
1,052,730 + -0.2
1,052,730 + +0.5
1,052,730 + +1.1
1,052,731 - +2.8
1,052,731 - +0.9
1,052,731 - -2.2
1,052,813 + MPMX19_01011 0.15 -0.1
1,052,813 + MPMX19_01011 0.15 -1.4
1,052,813 + MPMX19_01011 0.15 +0.1
1,052,813 + MPMX19_01011 0.15 -1.3
1,052,813 + MPMX19_01011 0.15 +0.5
1,052,813 + MPMX19_01011 0.15 +0.3
1,052,813 + MPMX19_01011 0.15 -0.5
1,052,813 + MPMX19_01011 0.15 +0.3
1,052,813 + MPMX19_01011 0.15 +0.3
1,052,813 + MPMX19_01011 0.15 -0.5
1,052,813 + MPMX19_01011 0.15 -1.0
1,052,813 + MPMX19_01011 0.15 -0.3
1,052,814 - MPMX19_01011 0.15 -0.2
1,052,814 - MPMX19_01011 0.15 -0.5
1,052,814 - MPMX19_01011 0.15 +1.4
1,052,814 - MPMX19_01011 0.15 -0.2
1,052,814 - MPMX19_01011 0.15 +0.7
1,052,814 - MPMX19_01011 0.15 -0.3
1,052,814 - MPMX19_01011 0.15 +0.7
1,052,814 - MPMX19_01011 0.15 +0.1
1,052,814 - MPMX19_01011 0.15 +1.3
1,052,814 - MPMX19_01011 0.15 -1.4
1,052,814 - MPMX19_01011 0.15 -0.4
1,052,814 - MPMX19_01011 0.15 +0.5
1,052,814 - MPMX19_01011 0.15 -1.3
1,052,814 - MPMX19_01011 0.15 -0.6
1,052,814 - MPMX19_01011 0.15 -0.2
1,052,814 - MPMX19_01011 0.15 -0.2
1,052,814 - MPMX19_01011 0.15 +0.3
1,052,814 - MPMX19_01011 0.15 -0.8
1,052,814 - MPMX19_01011 0.15 +0.7
1,052,817 + MPMX19_01011 0.16 +0.9
1,052,818 - MPMX19_01011 0.16 -0.3
1,052,818 - MPMX19_01011 0.16 -1.3
1,052,818 - MPMX19_01011 0.16 -0.0
1,052,818 - MPMX19_01011 0.16 -0.7
1,052,818 - MPMX19_01011 0.16 +0.4
1,052,818 - MPMX19_01011 0.16 -0.9
1,052,818 - MPMX19_01011 0.16 -1.1
1,052,818 - MPMX19_01011 0.16 -0.8
1,052,818 - MPMX19_01011 0.16 -0.1
1,052,818 - MPMX19_01011 0.16 -0.2
1,052,818 - MPMX19_01011 0.16 -0.1
1,052,818 - MPMX19_01011 0.16 +0.1
1,052,818 - MPMX19_01011 0.16 +1.4
1,052,873 + MPMX19_01011 0.20 +0.3
1,052,873 + MPMX19_01011 0.20 -1.0
1,052,873 + MPMX19_01011 0.20 -0.6
1,053,090 + MPMX19_01011 0.38 -0.7
1,053,091 - MPMX19_01011 0.38 -1.0
1,053,091 - MPMX19_01011 0.38 +0.3
1,053,091 - MPMX19_01011 0.38 +1.0
1,053,970 + MPMX19_01012 0.23 +0.7
1,053,970 + MPMX19_01012 0.23 +0.9
1,053,970 + MPMX19_01012 0.23 +0.7
1,053,970 + MPMX19_01012 0.23 +0.7
1,053,970 + MPMX19_01012 0.23 -0.1
1,053,970 + MPMX19_01012 0.23 -0.3
1,053,970 + MPMX19_01012 0.23 +0.4
1,053,971 - MPMX19_01012 0.23 -0.7
1,053,971 - MPMX19_01012 0.23 +0.2
1,053,971 - MPMX19_01012 0.23 +0.9
1,053,971 - MPMX19_01012 0.23 -0.2
1,053,971 - MPMX19_01012 0.23 +0.9
1,053,971 - MPMX19_01012 0.23 +0.5
1,054,316 + -0.4
1,054,316 + -1.6
1,054,316 + -1.2
1,054,404 + MPMX19_01013 0.11 -0.3
1,054,404 + MPMX19_01013 0.11 -0.6
1,054,404 + MPMX19_01013 0.11 -1.7
1,054,404 + MPMX19_01013 0.11 -1.5
1,054,405 - MPMX19_01013 0.12 +0.1
1,054,405 - MPMX19_01013 0.12 -0.4
1,054,405 - MPMX19_01013 0.12 -0.5
1,054,405 - MPMX19_01013 0.12 +0.8
1,054,413 + MPMX19_01013 0.13 +0.8
1,054,413 + MPMX19_01013 0.13 -1.1
1,054,413 + MPMX19_01013 0.13 +0.5
1,054,414 - MPMX19_01013 0.13 +0.3
1,054,414 - MPMX19_01013 0.13 +1.1
1,054,414 - MPMX19_01013 0.13 -0.1
1,054,446 + MPMX19_01013 0.20 -0.3
1,054,447 - MPMX19_01013 0.20 +0.4
1,054,447 - MPMX19_01013 0.20 -0.6
1,054,581 + MPMX19_01013 0.46 -1.3
1,054,581 + MPMX19_01013 0.46 +3.3
1,054,581 + MPMX19_01013 0.46 -0.2
1,054,581 + MPMX19_01013 0.46 -0.2
1,054,581 + MPMX19_01013 0.46 +0.3
1,054,581 + MPMX19_01013 0.46 -0.6
1,054,581 + MPMX19_01013 0.46 -0.4
1,054,581 + MPMX19_01013 0.46 +0.8
1,054,581 + MPMX19_01013 0.46 -0.1
1,054,581 + MPMX19_01013 0.46 -0.0
1,054,581 + MPMX19_01013 0.46 -0.4
1,054,581 + MPMX19_01013 0.46 +0.7
1,054,581 + MPMX19_01013 0.46 -0.3
1,054,581 + MPMX19_01013 0.46 +0.3
1,054,581 + MPMX19_01013 0.46 +0.3
1,054,581 + MPMX19_01013 0.46 +0.4
1,054,581 + MPMX19_01013 0.46 -0.4
1,054,581 + MPMX19_01013 0.46 +0.5
1,054,581 + MPMX19_01013 0.46 -0.6
1,054,581 + MPMX19_01013 0.46 +0.2
1,054,581 + MPMX19_01013 0.46 -0.4
1,054,581 + MPMX19_01013 0.46 +0.8
1,054,581 + MPMX19_01013 0.46 +0.8
1,054,581 + MPMX19_01013 0.46 +0.1
1,054,581 + MPMX19_01013 0.46 +0.4
1,054,581 + MPMX19_01013 0.46 -0.9
1,054,581 + MPMX19_01013 0.46 -0.9
1,054,581 + MPMX19_01013 0.46 +0.3
1,054,581 + MPMX19_01013 0.46 +0.7
1,054,581 + MPMX19_01013 0.46 -1.1
1,054,581 - MPMX19_01013 0.46 +0.6
1,054,582 - MPMX19_01013 0.46 +0.3
1,054,582 - MPMX19_01013 0.46 +0.7
1,054,582 - MPMX19_01013 0.46 -0.2
1,054,582 - MPMX19_01013 0.46 +0.1
1,054,582 - MPMX19_01013 0.46 +0.7
1,054,582 - MPMX19_01013 0.46 -1.3
1,054,582 - MPMX19_01013 0.46 -0.2
1,054,582 - MPMX19_01013 0.46 -0.8
1,054,582 - MPMX19_01013 0.46 -0.1
1,054,582 - MPMX19_01013 0.46 +0.3
1,054,582 - MPMX19_01013 0.46 -1.3
1,054,582 - MPMX19_01013 0.46 +1.4
1,054,582 - MPMX19_01013 0.46 -0.2
1,054,582 - MPMX19_01013 0.46 +0.3
1,054,582 - MPMX19_01013 0.46 +0.7
1,054,582 - MPMX19_01013 0.46 +1.1
1,054,582 - MPMX19_01013 0.46 -0.7
1,054,582 - MPMX19_01013 0.46 -1.0
1,054,582 - MPMX19_01013 0.46 -0.3
1,054,582 - MPMX19_01013 0.46 -0.7
1,054,582 - MPMX19_01013 0.46 -0.8
1,054,582 - MPMX19_01013 0.46 +0.7
1,054,582 - MPMX19_01013 0.46 -0.8
1,054,582 - MPMX19_01013 0.46 +0.1
1,054,582 - MPMX19_01013 0.46 -0.9
1,054,582 - MPMX19_01013 0.46 -0.1
1,054,582 - MPMX19_01013 0.46 -0.6
1,054,582 - MPMX19_01013 0.46 -0.3
1,054,582 - MPMX19_01013 0.46 +1.1
1,054,582 - MPMX19_01013 0.46 +0.7
1,054,582 - MPMX19_01013 0.46 -0.4
1,054,582 - MPMX19_01013 0.46 +0.8
1,054,582 - MPMX19_01013 0.46 +1.7
1,054,582 - MPMX19_01013 0.46 +0.7
1,054,602 + MPMX19_01013 0.50 +0.7
1,054,729 - MPMX19_01013 0.75 -0.9
1,054,743 + MPMX19_01013 0.78 -0.7
1,054,743 + MPMX19_01013 0.78 +0.2
1,054,743 + MPMX19_01013 0.78 +0.3
1,054,743 + MPMX19_01013 0.78 +0.5
1,054,743 + MPMX19_01013 0.78 +0.8
1,054,743 + MPMX19_01013 0.78 +0.9
1,054,743 + MPMX19_01013 0.78 +0.8
1,054,744 - MPMX19_01013 0.78 +0.2
1,054,744 - MPMX19_01013 0.78 -0.4

Or see this region's nucleotide sequence