Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00085

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00084 and MPMX19_00085 are separated by 373 nucleotidesMPMX19_00085 and MPMX19_00086 are separated by 60 nucleotides MPMX19_00084: MPMX19_00084 - Phenylalanine--tRNA ligase beta subunit, at 89,040 to 91,451 _00084 MPMX19_00085: MPMX19_00085 - hypothetical protein, at 91,825 to 92,238 _00085 MPMX19_00086: MPMX19_00086 - 3'3'-cGAMP-specific phosphodiesterase 2, at 92,299 to 94,113 _00086 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 91.481 kb on + strandat 91.482 kb on - strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.531 kb on + strandat 91.531 kb on + strandat 91.532 kb on - strandat 91.564 kb on + strandat 91.564 kb on + strandat 91.564 kb on + strandat 91.564 kb on + strandat 91.565 kb on - strandat 91.565 kb on - strandat 91.565 kb on - strandat 91.565 kb on - strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.825 kb on - strandat 91.945 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.237 kb on - strandat 92.251 kb on + strandat 92.252 kb on - strandat 92.445 kb on - strandat 92.445 kb on - strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 93.020 kb on + strand, within MPMX19_00086at 93.020 kb on + strand, within MPMX19_00086at 93.021 kb on - strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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91,481 + -0.5
91,482 - -0.9
91,485 + +0.3
91,485 + -1.4
91,485 + -0.8
91,485 + +0.1
91,485 + -1.3
91,485 + +0.3
91,486 - -0.0
91,486 - -1.5
91,486 - -0.3
91,486 - -0.9
91,486 - -1.6
91,486 - -0.1
91,486 - -1.6
91,531 + -0.7
91,531 + -3.4
91,532 - -1.1
91,564 + -0.0
91,564 + -1.3
91,564 + +1.4
91,564 + -1.8
91,565 - +0.1
91,565 - -0.5
91,565 - +1.8
91,565 - +0.4
91,583 - -0.0
91,583 - -0.6
91,825 - +0.7
91,945 + MPMX19_00085 0.29 -0.4
92,035 + MPMX19_00085 0.51 +0.9
92,035 + MPMX19_00085 0.51 -0.1
92,035 + MPMX19_00085 0.51 +1.2
92,035 + MPMX19_00085 0.51 +0.6
92,035 + MPMX19_00085 0.51 +0.6
92,035 + MPMX19_00085 0.51 +0.3
92,035 + MPMX19_00085 0.51 -1.5
92,035 + MPMX19_00085 0.51 -0.4
92,036 - MPMX19_00085 0.51 +0.1
92,036 - MPMX19_00085 0.51 +0.8
92,036 - MPMX19_00085 0.51 +1.0
92,036 - MPMX19_00085 0.51 -0.4
92,036 - MPMX19_00085 0.51 -0.5
92,036 - MPMX19_00085 0.51 +1.0
92,036 - MPMX19_00085 0.51 -1.6
92,036 - MPMX19_00085 0.51 +0.5
92,036 - MPMX19_00085 0.51 +0.4
92,036 - MPMX19_00085 0.51 -0.4
92,237 - +0.7
92,251 + -0.0
92,252 - -1.2
92,445 - -0.3
92,445 - -0.2
92,471 + -0.9
92,471 + -1.0
92,471 + -0.0
92,471 + -0.4
92,471 + +0.0
92,472 - -0.1
92,472 - -0.1
92,472 - +0.3
92,472 - -0.4
92,472 - -1.0
92,472 - -2.0
92,472 - -0.4
92,472 - -1.8
92,655 + MPMX19_00086 0.20 +0.0
92,655 + MPMX19_00086 0.20 -1.3
92,655 + MPMX19_00086 0.20 -2.0
92,655 + MPMX19_00086 0.20 +0.3
92,655 + MPMX19_00086 0.20 -0.4
92,655 + MPMX19_00086 0.20 +0.9
92,655 + MPMX19_00086 0.20 +1.1
92,655 + MPMX19_00086 0.20 +1.3
92,655 + MPMX19_00086 0.20 -0.2
92,655 + MPMX19_00086 0.20 -1.6
92,655 + MPMX19_00086 0.20 -0.1
92,655 + MPMX19_00086 0.20 -1.1
92,655 + MPMX19_00086 0.20 +0.3
92,655 + MPMX19_00086 0.20 -0.8
92,655 + MPMX19_00086 0.20 +0.7
92,655 + MPMX19_00086 0.20 -1.3
92,655 + MPMX19_00086 0.20 +0.1
92,655 + MPMX19_00086 0.20 +1.2
92,655 + MPMX19_00086 0.20 +0.4
92,655 + MPMX19_00086 0.20 -0.9
92,655 + MPMX19_00086 0.20 -0.8
92,655 + MPMX19_00086 0.20 -0.1
92,656 - MPMX19_00086 0.20 +0.9
92,656 - MPMX19_00086 0.20 -0.0
92,656 - MPMX19_00086 0.20 -0.4
92,656 - MPMX19_00086 0.20 -0.4
92,656 - MPMX19_00086 0.20 -0.7
92,656 - MPMX19_00086 0.20 +2.0
92,656 - MPMX19_00086 0.20 -0.2
92,656 - MPMX19_00086 0.20 +1.2
92,656 - MPMX19_00086 0.20 +0.2
92,656 - MPMX19_00086 0.20 -0.3
92,656 - MPMX19_00086 0.20 +1.6
92,656 - MPMX19_00086 0.20 +0.8
92,656 - MPMX19_00086 0.20 -0.4
92,656 - MPMX19_00086 0.20 +0.0
92,656 - MPMX19_00086 0.20 -0.5
92,656 - MPMX19_00086 0.20 +0.0
92,656 - MPMX19_00086 0.20 -0.4
92,656 - MPMX19_00086 0.20 -0.3
92,656 - MPMX19_00086 0.20 -0.6
92,656 - MPMX19_00086 0.20 -1.0
92,656 - MPMX19_00086 0.20 -0.4
93,020 + MPMX19_00086 0.40 +0.3
93,020 + MPMX19_00086 0.40 +0.6
93,021 - MPMX19_00086 0.40 -0.1
93,032 + MPMX19_00086 0.40 -0.1
93,032 + MPMX19_00086 0.40 -0.3
93,032 + MPMX19_00086 0.40 -0.2
93,032 + MPMX19_00086 0.40 -1.9
93,033 - MPMX19_00086 0.40 +0.4
93,033 - MPMX19_00086 0.40 +0.6
93,033 - MPMX19_00086 0.40 -1.3
93,033 - MPMX19_00086 0.40 +0.2
93,128 + MPMX19_00086 0.46 -0.1
93,128 + MPMX19_00086 0.46 -1.1
93,128 + MPMX19_00086 0.46 +0.7
93,128 + MPMX19_00086 0.46 -0.4
93,128 + MPMX19_00086 0.46 -0.8
93,128 + MPMX19_00086 0.46 +0.0
93,129 - MPMX19_00086 0.46 -0.9
93,129 - MPMX19_00086 0.46 -0.0
93,129 - MPMX19_00086 0.46 -0.1
93,129 - MPMX19_00086 0.46 -0.1
93,129 - MPMX19_00086 0.46 -0.3
93,129 - MPMX19_00086 0.46 +0.7
93,129 - MPMX19_00086 0.46 -0.7
93,129 - MPMX19_00086 0.46 -0.4
93,129 - MPMX19_00086 0.46 +0.4
93,164 + MPMX19_00086 0.48 +0.1
93,164 + MPMX19_00086 0.48 -0.2
93,164 + MPMX19_00086 0.48 -0.5
93,164 + MPMX19_00086 0.48 -0.2
93,165 - MPMX19_00086 0.48 +0.5
93,165 - MPMX19_00086 0.48 -1.2
93,165 - MPMX19_00086 0.48 +0.7
93,165 - MPMX19_00086 0.48 -1.1
93,165 - MPMX19_00086 0.48 +0.6
93,165 - MPMX19_00086 0.48 -0.1

Or see this region's nucleotide sequence