Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28355

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfepA and modD are separated by 25 nucleotidesmodD and OKFHMN_28360 are separated by 164 nucleotidesOKFHMN_28360 and fepC are separated by 9 nucleotides OKFHMN_28350: fepA - TonB-dependent receptor, at 5,436,490 to 5,438,460 fepA OKFHMN_28355: modD - Putative pyrophosphorylase ModD, at 5,438,486 to 5,439,340 modD OKFHMN_28360: OKFHMN_28360 - SAM-dependent methyltransferase, at 5,439,505 to 5,440,149 _28360 OKFHMN_28365: fepC - ABC transporter ATP-binding protein, at 5,440,159 to 5,440,917 fepC Position (kb) 5438 5439 5440Strain fitness (log2 ratio) -1 0 1at 5438.162 kb on + strand, within fepAat 5438.163 kb on - strand, within fepAat 5438.203 kb on - strand, within fepAat 5438.557 kb on + strandat 5438.859 kb on - strand, within modDat 5439.238 kb on - strand, within modDat 5439.439 kb on + strandat 5439.598 kb on - strand, within OKFHMN_28360

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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5,438,162 + fepA OKFHMN_28350 0.85 -0.7
5,438,163 - fepA OKFHMN_28350 0.85 +0.7
5,438,203 - fepA OKFHMN_28350 0.87 -0.8
5,438,557 + -0.2
5,438,859 - modD OKFHMN_28355 0.44 -0.7
5,439,238 - modD OKFHMN_28355 0.88 +0.9
5,439,439 + +1.5
5,439,598 - OKFHMN_28360 0.14 +1.2

Or see this region's nucleotide sequence