Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgK and ydgT are separated by 85 nucleotides ydgT and blr are separated by 272 nucleotides blr and ydgJ are separated by 242 nucleotides ydgJ and add are separated by 35 nucleotides
OKFHMN_27560: ydgK - Inner membrane protein YdgK, at 5,305,099 to 5,305,539
ydgK
OKFHMN_27565: ydgT - transcription modulator YdgT, at 5,305,625 to 5,305,840
ydgT
OKFHMN_27570: blr - division septum protein Blr, at 5,306,113 to 5,306,238
blr
OKFHMN_27575: ydgJ - Uncharacterized oxidoreductase YdgJ, at 5,306,481 to 5,307,521
ydgJ
OKFHMN_27580: add - adenosine deaminase, at 5,307,557 to 5,308,558
add
Position (kb) 5306
5307
5308 Strain fitness (log2 ratio) -1
0
1 at 5305.516 kb on - strand at 5305.540 kb on - strand at 5305.582 kb on - strand at 5305.591 kb on - strand at 5305.635 kb on + strand at 5305.875 kb on - strand at 5306.114 kb on + strand at 5306.115 kb on - strand at 5306.115 kb on - strand at 5306.126 kb on - strand, within blr at 5306.126 kb on - strand, within blr at 5306.240 kb on - strand at 5306.379 kb on + strand at 5306.459 kb on + strand at 5307.043 kb on + strand, within ydgJ at 5307.192 kb on + strand, within ydgJ at 5307.192 kb on + strand, within ydgJ at 5307.228 kb on + strand, within ydgJ at 5307.388 kb on - strand, within ydgJ at 5307.686 kb on - strand, within add at 5308.465 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 5,305,516 - -1.2 5,305,540 - +1.5 5,305,582 - +0.5 5,305,591 - -0.6 5,305,635 + -0.5 5,305,875 - +1.5 5,306,114 + -1.5 5,306,115 - +0.5 5,306,115 - +1.5 5,306,126 - blr OKFHMN_27570 0.10 -0.5 5,306,126 - blr OKFHMN_27570 0.10 -0.7 5,306,240 - +0.8 5,306,379 + +0.5 5,306,459 + +1.5 5,307,043 + ydgJ OKFHMN_27575 0.54 -0.3 5,307,192 + ydgJ OKFHMN_27575 0.68 +0.4 5,307,192 + ydgJ OKFHMN_27575 0.68 -0.4 5,307,228 + ydgJ OKFHMN_27575 0.72 +0.2 5,307,388 - ydgJ OKFHMN_27575 0.87 -0.8 5,307,686 - add OKFHMN_27580 0.13 +0.9 5,308,465 + +0.5
Or see this region's nucleotide sequence