Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27570

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydgK and ydgT are separated by 85 nucleotidesydgT and blr are separated by 272 nucleotidesblr and ydgJ are separated by 242 nucleotides OKFHMN_27560: ydgK - Inner membrane protein YdgK, at 5,305,099 to 5,305,539 ydgK OKFHMN_27565: ydgT - transcription modulator YdgT, at 5,305,625 to 5,305,840 ydgT OKFHMN_27570: blr - division septum protein Blr, at 5,306,113 to 5,306,238 blr OKFHMN_27575: ydgJ - Uncharacterized oxidoreductase YdgJ, at 5,306,481 to 5,307,521 ydgJ Position (kb) 5306 5307Strain fitness (log2 ratio) -1 0 1at 5305.199 kb on - strand, within ydgKat 5305.516 kb on - strandat 5305.540 kb on - strandat 5305.582 kb on - strandat 5305.591 kb on - strandat 5305.635 kb on + strandat 5305.875 kb on - strandat 5306.114 kb on + strandat 5306.115 kb on - strandat 5306.115 kb on - strandat 5306.126 kb on - strand, within blrat 5306.126 kb on - strand, within blrat 5306.240 kb on - strandat 5306.379 kb on + strandat 5306.459 kb on + strandat 5307.043 kb on + strand, within ydgJat 5307.192 kb on + strand, within ydgJat 5307.192 kb on + strand, within ydgJat 5307.228 kb on + strand, within ydgJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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5,305,199 - ydgK OKFHMN_27560 0.23 -0.1
5,305,516 - -1.2
5,305,540 - +1.5
5,305,582 - +0.5
5,305,591 - -0.6
5,305,635 + -0.5
5,305,875 - +1.5
5,306,114 + -1.5
5,306,115 - +0.5
5,306,115 - +1.5
5,306,126 - blr OKFHMN_27570 0.10 -0.5
5,306,126 - blr OKFHMN_27570 0.10 -0.7
5,306,240 - +0.8
5,306,379 + +0.5
5,306,459 + +1.5
5,307,043 + ydgJ OKFHMN_27575 0.54 -0.3
5,307,192 + ydgJ OKFHMN_27575 0.68 +0.4
5,307,192 + ydgJ OKFHMN_27575 0.68 -0.4
5,307,228 + ydgJ OKFHMN_27575 0.72 +0.2

Or see this region's nucleotide sequence