Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mepH and grxD are separated by 334 nucleotides grxD and lhr are separated by 50 nucleotides lhr and rnt are separated by 92 nucleotides rnt and OKFHMN_27430 are separated by 102 nucleotides
OKFHMN_27410: mepH - peptidoglycan DD-endopeptidase MepH, at 5,275,443 to 5,276,258
mepH
OKFHMN_27415: grxD - monothiol glutaredoxin 4, at 5,276,593 to 5,276,940
grxD
OKFHMN_27420: lhr - ATP-dependent helicase, at 5,276,991 to 5,281,607
lhr
OKFHMN_27425: rnt - ribonuclease T, at 5,281,700 to 5,282,347
rnt
OKFHMN_27430: OKFHMN_27430 - Lactoylglutathione lyase, at 5,282,450 to 5,282,857
_27430
Position (kb) 5276
5277
5278
5279
5280
5281
5282 Strain fitness (log2 ratio) -1
0
1
2
3 at 5276.240 kb on + strand at 5276.346 kb on + strand at 5276.356 kb on + strand at 5276.737 kb on + strand, within grxD at 5276.785 kb on + strand, within grxD at 5278.006 kb on - strand, within lhr at 5278.081 kb on - strand, within lhr at 5278.562 kb on - strand, within lhr at 5278.869 kb on + strand, within lhr at 5278.870 kb on - strand, within lhr at 5278.897 kb on - strand, within lhr at 5278.999 kb on - strand, within lhr at 5279.101 kb on + strand, within lhr at 5279.446 kb on - strand, within lhr at 5279.872 kb on - strand, within lhr at 5279.944 kb on + strand, within lhr at 5279.944 kb on + strand, within lhr at 5279.945 kb on - strand, within lhr at 5279.945 kb on - strand, within lhr at 5279.945 kb on - strand, within lhr at 5281.132 kb on + strand, within lhr at 5281.132 kb on + strand, within lhr at 5281.615 kb on - strand at 5281.649 kb on - strand at 5281.659 kb on + strand at 5281.659 kb on + strand at 5281.701 kb on + strand at 5282.452 kb on - strand at 5282.537 kb on - strand, within OKFHMN_27430
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 5,276,240 + +0.9 5,276,346 + -0.5 5,276,356 + +0.5 5,276,737 + grxD OKFHMN_27415 0.41 +0.3 5,276,785 + grxD OKFHMN_27415 0.55 -0.6 5,278,006 - lhr OKFHMN_27420 0.22 +0.6 5,278,081 - lhr OKFHMN_27420 0.24 +0.5 5,278,562 - lhr OKFHMN_27420 0.34 -0.5 5,278,869 + lhr OKFHMN_27420 0.41 +1.1 5,278,870 - lhr OKFHMN_27420 0.41 -0.1 5,278,897 - lhr OKFHMN_27420 0.41 +3.1 5,278,999 - lhr OKFHMN_27420 0.43 +0.5 5,279,101 + lhr OKFHMN_27420 0.46 +0.5 5,279,446 - lhr OKFHMN_27420 0.53 -0.1 5,279,872 - lhr OKFHMN_27420 0.62 +0.4 5,279,944 + lhr OKFHMN_27420 0.64 +0.2 5,279,944 + lhr OKFHMN_27420 0.64 -0.4 5,279,945 - lhr OKFHMN_27420 0.64 +0.1 5,279,945 - lhr OKFHMN_27420 0.64 -0.1 5,279,945 - lhr OKFHMN_27420 0.64 -0.2 5,281,132 + lhr OKFHMN_27420 0.90 +0.4 5,281,132 + lhr OKFHMN_27420 0.90 -0.4 5,281,615 - +1.2 5,281,649 - +0.8 5,281,659 + -0.3 5,281,659 + +1.1 5,281,701 + +0.5 5,282,452 - +0.1 5,282,537 - OKFHMN_27430 0.21 +0.3
Or see this region's nucleotide sequence