Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26730

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyeaD and gapA are separated by 83 nucleotidesgapA and msrB are separated by 341 nucleotidesmsrB and yeaC are separated by 41 nucleotides OKFHMN_26725: yeaD - Putative glucose-6-phosphate 1-epimerase, at 5,144,083 to 5,144,967 yeaD OKFHMN_26730: gapA - glyceraldehyde-3-phosphate dehydrogenase, at 5,145,051 to 5,146,046 gapA OKFHMN_26735: msrB - Peptide methionine sulfoxide reductase MsrB, at 5,146,388 to 5,146,801 msrB OKFHMN_26740: yeaC - Uncharacterized protein YeaC, at 5,146,843 to 5,147,115 yeaC Position (kb) 5145 5146 5147Strain fitness (log2 ratio) -1 0 1at 5144.384 kb on - strand, within yeaDat 5146.160 kb on - strandat 5146.166 kb on + strandat 5146.515 kb on + strand, within msrBat 5146.515 kb on + strand, within msrBat 5146.625 kb on + strand, within msrBat 5146.675 kb on + strand, within msrBat 5146.744 kb on + strand, within msrBat 5146.744 kb on + strand, within msrBat 5146.861 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
5,144,384 - yeaD OKFHMN_26725 0.34 -0.8
5,146,160 - +0.0
5,146,166 + +0.4
5,146,515 + msrB OKFHMN_26735 0.31 -0.1
5,146,515 + msrB OKFHMN_26735 0.31 -0.8
5,146,625 + msrB OKFHMN_26735 0.57 +1.2
5,146,675 + msrB OKFHMN_26735 0.69 +0.7
5,146,744 + msrB OKFHMN_26735 0.86 +1.5
5,146,744 + msrB OKFHMN_26735 0.86 -1.0
5,146,861 - +0.1

Or see this region's nucleotide sequence