Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsrB and rcsA are separated by 43 nucleotides rcsA and fliR are separated by 284 nucleotides fliR and fliQ are separated by 7 nucleotides fliQ and fliP are separated by 9 nucleotides
OKFHMN_25645: dsrB - protein DsrB, at 4,961,760 to 4,961,948
dsrB
OKFHMN_25650: rcsA - transcriptional regulator RcsA, at 4,961,992 to 4,962,615
rcsA
OKFHMN_25655: fliR - flagellar type III secretion system protein FliR, at 4,962,900 to 4,963,685
fliR
OKFHMN_25660: fliQ - flagellar biosynthesis protein FliQ, at 4,963,693 to 4,963,962
fliQ
OKFHMN_25665: fliP - flagellar type III secretion system pore protein FliP, at 4,963,972 to 4,964,709
fliP
Position (kb) 4962
4963
4964 Strain fitness (log2 ratio) -2
-1
0
1 at 4962.588 kb on + strand at 4962.923 kb on + strand at 4963.322 kb on + strand, within fliR at 4963.686 kb on - strand at 4963.706 kb on + strand at 4963.707 kb on - strand at 4963.737 kb on - strand, within fliQ at 4964.270 kb on - strand, within fliP at 4964.270 kb on - strand, within fliP at 4964.413 kb on - strand, within fliP
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,962,588 + -0.4 4,962,923 + -1.2 4,963,322 + fliR OKFHMN_25655 0.54 -1.2 4,963,686 - -0.2 4,963,706 + -1.0 4,963,707 - +1.0 4,963,737 - fliQ OKFHMN_25660 0.16 +0.8 4,964,270 - fliP OKFHMN_25665 0.40 -1.0 4,964,270 - fliP OKFHMN_25665 0.40 -2.0 4,964,413 - fliP OKFHMN_25665 0.60 -0.7
Or see this region's nucleotide sequence