Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25540

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_25530 and OKFHMN_25535 are separated by 50 nucleotidesOKFHMN_25535 and yodB are separated by 570 nucleotidesyodB and zinT are separated by 342 nucleotides OKFHMN_25530: OKFHMN_25530 - hypothetical protein, at 4,942,764 to 4,942,982 _25530 OKFHMN_25535: OKFHMN_25535 - tRNA-Xxx, at 4,943,033 to 4,943,122 _25535 OKFHMN_25540: yodB - Cytochrome b561-like protein, at 4,943,693 to 4,944,223 yodB OKFHMN_25545: zinT - metal-binding protein ZinT, at 4,944,566 to 4,945,237 zinT Position (kb) 4943 4944 4945Strain fitness (log2 ratio) -1 0 1 2 3at 4942.721 kb on + strandat 4942.809 kb on + strand, within OKFHMN_25530at 4942.834 kb on + strand, within OKFHMN_25530at 4943.031 kb on + strandat 4943.729 kb on - strandat 4943.950 kb on - strand, within yodBat 4944.112 kb on + strand, within yodBat 4944.113 kb on - strand, within yodBat 4944.283 kb on + strandat 4944.284 kb on - strandat 4944.349 kb on - strandat 4944.457 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,942,721 + +0.6
4,942,809 + OKFHMN_25530 0.21 -0.2
4,942,834 + OKFHMN_25530 0.32 +0.7
4,943,031 + +2.1
4,943,729 - +0.0
4,943,950 - yodB OKFHMN_25540 0.48 -0.7
4,944,112 + yodB OKFHMN_25540 0.79 -0.7
4,944,113 - yodB OKFHMN_25540 0.79 +0.6
4,944,283 + +3.6
4,944,284 - +1.2
4,944,349 - +0.1
4,944,457 - -0.7

Or see this region's nucleotide sequence