Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25335

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrusA and OKFHMN_25330 overlap by 4 nucleotidesOKFHMN_25330 and Ile2_trna are separated by 210 nucleotidesIle2_trna and Arg_trna are separated by 7 nucleotidesArg_trna and Arg_trna are separated by 13 nucleotidesArg_trna and terB are separated by 173 nucleotidesterB and OKFHMN_25355 overlap by 4 nucleotides OKFHMN_25325: rusA - Endodeoxyribonuclease RusA, at 4,911,864 to 4,912,223 rusA OKFHMN_25330: OKFHMN_25330 - antiterminator, at 4,912,220 to 4,912,909 _25330 OKFHMN_25335: Ile2_trna - tRNA-Ile2(cat), at 4,913,120 to 4,913,195 _trna OKFHMN_25340: Arg_trna - tRNA-Arg(tcg), at 4,913,203 to 4,913,279 _trna OKFHMN_25345: Arg_trna - tRNA-Arg(tct), at 4,913,293 to 4,913,369 _trna OKFHMN_25350: terB - tellurite resistance protein, at 4,913,543 to 4,913,971 terB OKFHMN_25355: OKFHMN_25355 - DUF3927 domain-containing protein, at 4,913,968 to 4,914,135 _25355 Position (kb) 4913 4914Strain fitness (log2 ratio) -2 -1 0 1at 4912.232 kb on + strandat 4913.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,912,232 + -0.8
4,913,462 - -1.9

Or see this region's nucleotide sequence