Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_25195 and OKFHMN_25200 are separated by 13 nucleotides OKFHMN_25200 and Asn_trna are separated by 123 nucleotides Asn_trna and mtfA are separated by 100 nucleotides mtfA and Ser_trna are separated by 93 nucleotides
OKFHMN_25195: OKFHMN_25195 - Ig-like domain-containing protein, at 4,889,638 to 4,897,647
_25195
OKFHMN_25200: OKFHMN_25200 - hypothetical protein, at 4,897,661 to 4,897,810
_25200
OKFHMN_25205: Asn_trna - tRNA-Asn(gtt), at 4,897,934 to 4,898,009
_trna
OKFHMN_25210: mtfA - DgsA anti-repressor MtfA, at 4,898,110 to 4,898,907
mtfA
OKFHMN_25215: Ser_trna - tRNA-Ser(cga), at 4,899,001 to 4,899,090
_trna
Position (kb)
4897
4898
4899 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4896.955 kb on - strand at 4897.409 kb on + strand at 4897.520 kb on - strand at 4897.624 kb on + strand at 4897.848 kb on - strand at 4897.856 kb on - strand at 4898.297 kb on + strand, within mtfA at 4898.297 kb on + strand, within mtfA at 4898.695 kb on + strand, within mtfA at 4898.884 kb on + strand at 4898.901 kb on + strand at 4898.901 kb on + strand at 4898.901 kb on + strand at 4898.902 kb on - strand at 4898.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,896,955 - +1.3 4,897,409 + +1.8 4,897,520 - +1.0 4,897,624 + +2.2 4,897,848 - +0.6 4,897,856 - +0.2 4,898,297 + mtfA OKFHMN_25210 0.23 +1.6 4,898,297 + mtfA OKFHMN_25210 0.23 -1.4 4,898,695 + mtfA OKFHMN_25210 0.73 +0.3 4,898,884 + -0.0 4,898,901 + +0.7 4,898,901 + +0.6 4,898,901 + +1.4 4,898,902 - -0.5 4,898,961 - -1.9
Or see this region's nucleotide sequence