Strain Fitness in Escherichia coli ECRC100 around OKFHMN_23740

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_23725 and Ile2_trna are separated by 441 nucleotidesIle2_trna and Arg_trna are separated by 9 nucleotidesArg_trna and Arg_trna are separated by 13 nucleotidesArg_trna and OKFHMN_23755 are separated by 511 nucleotides OKFHMN_23725: OKFHMN_23725 - antitermination protein, at 4,632,997 to 4,633,431 _23725 OKFHMN_23730: Ile2_trna - tRNA-Ile2(cat), at 4,633,873 to 4,633,948 _trna OKFHMN_23735: Arg_trna - tRNA-Arg(tcg), at 4,633,958 to 4,634,034 _trna OKFHMN_23740: Arg_trna - tRNA-Arg(tct), at 4,634,048 to 4,634,124 _trna OKFHMN_23755: OKFHMN_23755 - sialate O-acetylesterase, at 4,634,636 to 4,636,582 _23755 Position (kb) 4634 4635Strain fitness (log2 ratio) -2 -1 0 1at 4633.164 kb on + strand, within OKFHMN_23725at 4633.165 kb on - strand, within OKFHMN_23725at 4633.165 kb on - strand, within OKFHMN_23725at 4633.219 kb on + strand, within OKFHMN_23725at 4633.220 kb on - strand, within OKFHMN_23725at 4633.278 kb on + strand, within OKFHMN_23725at 4633.278 kb on + strand, within OKFHMN_23725at 4633.280 kb on + strand, within OKFHMN_23725at 4633.285 kb on - strand, within OKFHMN_23725at 4633.398 kb on - strandat 4633.441 kb on + strandat 4633.460 kb on - strandat 4633.476 kb on + strandat 4633.523 kb on - strandat 4633.562 kb on - strandat 4633.609 kb on + strandat 4633.718 kb on + strandat 4633.719 kb on - strandat 4633.813 kb on + strandat 4633.814 kb on - strandat 4633.833 kb on + strandat 4633.952 kb on + strandat 4633.953 kb on - strandat 4633.953 kb on - strandat 4633.962 kb on + strandat 4634.135 kb on - strandat 4634.197 kb on + strandat 4634.197 kb on + strandat 4634.251 kb on + strandat 4634.847 kb on + strand, within OKFHMN_23755at 4634.882 kb on - strand, within OKFHMN_23755

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,633,164 + OKFHMN_23725 0.38 +1.3
4,633,165 - OKFHMN_23725 0.39 +0.8
4,633,165 - OKFHMN_23725 0.39 -1.5
4,633,219 + OKFHMN_23725 0.51 -0.5
4,633,220 - OKFHMN_23725 0.51 +1.6
4,633,278 + OKFHMN_23725 0.65 -2.1
4,633,278 + OKFHMN_23725 0.65 +1.6
4,633,280 + OKFHMN_23725 0.65 -1.9
4,633,285 - OKFHMN_23725 0.66 +0.6
4,633,398 - +1.1
4,633,441 + -0.4
4,633,460 - +0.1
4,633,476 + -0.0
4,633,523 - -0.8
4,633,562 - -0.8
4,633,609 + +0.0
4,633,718 + -0.6
4,633,719 - -0.4
4,633,813 + +0.2
4,633,814 - -0.0
4,633,833 + +0.2
4,633,952 + +0.1
4,633,953 - +0.2
4,633,953 - -0.3
4,633,962 + -0.3
4,634,135 - +0.7
4,634,197 + +0.4
4,634,197 + +0.1
4,634,251 + +0.6
4,634,847 + OKFHMN_23755 0.11 +1.0
4,634,882 - OKFHMN_23755 0.13 -1.4

Or see this region's nucleotide sequence