Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_23235 and OKFHMN_23240 are separated by 51 nucleotides OKFHMN_23240 and napF are separated by 15 nucleotides napF and napD overlap by 11 nucleotides napD and napA overlap by 4 nucleotides napA and napG are separated by 6 nucleotides napG and napH overlap by 14 nucleotides
OKFHMN_23235: OKFHMN_23235 - hypothetical protein, at 4,536,034 to 4,536,198
_23235
OKFHMN_23240: OKFHMN_23240 - Orf 5, at 4,536,250 to 4,536,291
_23240
OKFHMN_23245: napF - ferredoxin-type protein NapF, at 4,536,307 to 4,536,801
napF
OKFHMN_23250: napD - chaperone NapD, at 4,536,791 to 4,537,054
napD
OKFHMN_23255: napA - nitrate reductase catalytic subunit NapA, at 4,537,051 to 4,539,537
napA
OKFHMN_23260: napG - ferredoxin-type protein NapG, at 4,539,544 to 4,540,239
napG
OKFHMN_23265: napH - quinol dehydrogenase ferredoxin subunit NapH, at 4,540,226 to 4,541,089
napH
Position (kb) 4537
4538
4539
4540 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4536.179 kb on - strand, within OKFHMN_23235 at 4536.214 kb on + strand at 4536.245 kb on + strand at 4536.436 kb on - strand, within napF at 4536.439 kb on - strand, within napF at 4536.524 kb on - strand, within napF at 4536.555 kb on - strand, within napF at 4536.700 kb on + strand, within napF at 4536.714 kb on + strand, within napF at 4536.715 kb on - strand, within napF at 4536.800 kb on - strand at 4536.978 kb on + strand, within napD at 4537.075 kb on - strand at 4537.168 kb on - strand at 4537.303 kb on + strand, within napA at 4537.325 kb on - strand, within napA at 4537.372 kb on - strand, within napA at 4537.483 kb on - strand, within napA at 4537.506 kb on + strand, within napA at 4537.519 kb on + strand, within napA at 4537.520 kb on - strand, within napA at 4537.587 kb on + strand, within napA at 4537.601 kb on + strand, within napA at 4537.627 kb on - strand, within napA at 4537.858 kb on + strand, within napA at 4537.871 kb on - strand, within napA at 4537.873 kb on - strand, within napA at 4538.036 kb on - strand, within napA at 4538.056 kb on + strand, within napA at 4538.058 kb on + strand, within napA at 4538.058 kb on + strand, within napA at 4538.059 kb on - strand, within napA at 4538.348 kb on + strand, within napA at 4538.349 kb on - strand, within napA at 4538.476 kb on + strand, within napA at 4538.532 kb on + strand, within napA at 4538.654 kb on - strand, within napA at 4538.673 kb on + strand, within napA at 4538.674 kb on - strand, within napA at 4538.696 kb on + strand, within napA at 4538.920 kb on + strand, within napA at 4538.947 kb on + strand, within napA at 4538.947 kb on + strand, within napA at 4538.948 kb on - strand, within napA at 4539.040 kb on - strand, within napA at 4539.069 kb on + strand, within napA at 4539.101 kb on - strand, within napA at 4539.102 kb on + strand, within napA at 4539.102 kb on + strand, within napA at 4539.109 kb on + strand, within napA at 4539.127 kb on - strand, within napA at 4539.184 kb on + strand, within napA at 4539.184 kb on + strand, within napA at 4539.185 kb on - strand, within napA at 4539.422 kb on - strand at 4539.422 kb on - strand at 4539.422 kb on - strand at 4539.535 kb on + strand at 4539.536 kb on - strand at 4539.543 kb on + strand at 4539.543 kb on + strand at 4539.760 kb on + strand, within napG at 4539.761 kb on - strand, within napG at 4539.814 kb on + strand, within napG at 4539.938 kb on + strand, within napG at 4540.160 kb on + strand, within napG at 4540.386 kb on - strand, within napH at 4540.387 kb on + strand, within napH
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,536,179 - OKFHMN_23235 0.88 -1.2 4,536,214 + +0.3 4,536,245 + -0.4 4,536,436 - napF OKFHMN_23245 0.26 +1.0 4,536,439 - napF OKFHMN_23245 0.27 +1.5 4,536,524 - napF OKFHMN_23245 0.44 -0.6 4,536,555 - napF OKFHMN_23245 0.50 +0.0 4,536,700 + napF OKFHMN_23245 0.79 -1.2 4,536,714 + napF OKFHMN_23245 0.82 -0.6 4,536,715 - napF OKFHMN_23245 0.82 -0.5 4,536,800 - -0.0 4,536,978 + napD OKFHMN_23250 0.71 +0.2 4,537,075 - -0.7 4,537,168 - +0.4 4,537,303 + napA OKFHMN_23255 0.10 -1.7 4,537,325 - napA OKFHMN_23255 0.11 -1.4 4,537,372 - napA OKFHMN_23255 0.13 +2.6 4,537,483 - napA OKFHMN_23255 0.17 -0.4 4,537,506 + napA OKFHMN_23255 0.18 -0.8 4,537,519 + napA OKFHMN_23255 0.19 -0.6 4,537,520 - napA OKFHMN_23255 0.19 -0.4 4,537,587 + napA OKFHMN_23255 0.22 +0.4 4,537,601 + napA OKFHMN_23255 0.22 +0.1 4,537,627 - napA OKFHMN_23255 0.23 -1.4 4,537,858 + napA OKFHMN_23255 0.32 +0.8 4,537,871 - napA OKFHMN_23255 0.33 +0.2 4,537,873 - napA OKFHMN_23255 0.33 +0.3 4,538,036 - napA OKFHMN_23255 0.40 -2.0 4,538,056 + napA OKFHMN_23255 0.40 -0.0 4,538,058 + napA OKFHMN_23255 0.40 +1.9 4,538,058 + napA OKFHMN_23255 0.40 +1.4 4,538,059 - napA OKFHMN_23255 0.41 -0.7 4,538,348 + napA OKFHMN_23255 0.52 +0.6 4,538,349 - napA OKFHMN_23255 0.52 +0.5 4,538,476 + napA OKFHMN_23255 0.57 +0.2 4,538,532 + napA OKFHMN_23255 0.60 -0.4 4,538,654 - napA OKFHMN_23255 0.64 -1.4 4,538,673 + napA OKFHMN_23255 0.65 -0.2 4,538,674 - napA OKFHMN_23255 0.65 -0.2 4,538,696 + napA OKFHMN_23255 0.66 -0.4 4,538,920 + napA OKFHMN_23255 0.75 +1.6 4,538,947 + napA OKFHMN_23255 0.76 +0.0 4,538,947 + napA OKFHMN_23255 0.76 -0.1 4,538,948 - napA OKFHMN_23255 0.76 -0.6 4,539,040 - napA OKFHMN_23255 0.80 +3.2 4,539,069 + napA OKFHMN_23255 0.81 -0.6 4,539,101 - napA OKFHMN_23255 0.82 +3.2 4,539,102 + napA OKFHMN_23255 0.82 -0.4 4,539,102 + napA OKFHMN_23255 0.82 -0.8 4,539,109 + napA OKFHMN_23255 0.83 +2.2 4,539,127 - napA OKFHMN_23255 0.83 +1.0 4,539,184 + napA OKFHMN_23255 0.86 -0.2 4,539,184 + napA OKFHMN_23255 0.86 +0.1 4,539,185 - napA OKFHMN_23255 0.86 +0.4 4,539,422 - +1.8 4,539,422 - -0.6 4,539,422 - +0.1 4,539,535 + +0.6 4,539,536 - +0.0 4,539,543 + -1.0 4,539,543 + -0.2 4,539,760 + napG OKFHMN_23260 0.31 +1.2 4,539,761 - napG OKFHMN_23260 0.31 +2.3 4,539,814 + napG OKFHMN_23260 0.39 -0.3 4,539,938 + napG OKFHMN_23260 0.57 -0.9 4,540,160 + napG OKFHMN_23260 0.89 -0.1 4,540,386 - napH OKFHMN_23265 0.19 -0.4 4,540,387 + napH OKFHMN_23265 0.19 -0.5
Or see this region's nucleotide sequence