Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrdA and yfaL are separated by 695 nucleotides yfaL and ubiG are separated by 140 nucleotides
OKFHMN_23115: nrdA - ribonucleoside-diphosphate reductase subunit alpha, at 4,500,424 to 4,502,709
nrdA
OKFHMN_23120: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 4,503,405 to 4,507,157
yfaL
OKFHMN_23125: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 4,507,298 to 4,508,020
ubiG
Position (kb)
4503
4504
4505
4506
4507
4508 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4503.000 kb on - strand at 4503.190 kb on - strand at 4503.620 kb on + strand at 4504.086 kb on - strand, within yfaL at 4504.134 kb on + strand, within yfaL at 4504.136 kb on + strand, within yfaL at 4504.163 kb on + strand, within yfaL at 4504.163 kb on + strand, within yfaL at 4504.274 kb on + strand, within yfaL at 4504.274 kb on + strand, within yfaL at 4504.278 kb on + strand, within yfaL at 4504.288 kb on + strand, within yfaL at 4504.299 kb on - strand, within yfaL at 4504.340 kb on + strand, within yfaL at 4504.427 kb on + strand, within yfaL at 4504.439 kb on + strand, within yfaL at 4504.562 kb on + strand, within yfaL at 4504.562 kb on + strand, within yfaL at 4504.568 kb on + strand, within yfaL at 4504.654 kb on + strand, within yfaL at 4504.679 kb on + strand, within yfaL at 4504.680 kb on - strand, within yfaL at 4504.685 kb on + strand, within yfaL at 4504.686 kb on - strand, within yfaL at 4504.753 kb on - strand, within yfaL at 4504.795 kb on + strand, within yfaL at 4504.796 kb on - strand, within yfaL at 4504.932 kb on - strand, within yfaL at 4504.938 kb on + strand, within yfaL at 4504.938 kb on + strand, within yfaL at 4505.022 kb on - strand, within yfaL at 4505.022 kb on - strand, within yfaL at 4505.174 kb on + strand, within yfaL at 4505.174 kb on + strand, within yfaL at 4505.181 kb on + strand, within yfaL at 4505.208 kb on - strand, within yfaL at 4505.259 kb on - strand, within yfaL at 4505.458 kb on + strand, within yfaL at 4505.502 kb on + strand, within yfaL at 4505.503 kb on - strand, within yfaL at 4505.515 kb on + strand, within yfaL at 4505.669 kb on + strand, within yfaL at 4505.729 kb on + strand, within yfaL at 4505.729 kb on + strand, within yfaL at 4505.758 kb on - strand, within yfaL at 4505.795 kb on + strand, within yfaL at 4505.796 kb on - strand, within yfaL at 4505.878 kb on + strand, within yfaL at 4505.879 kb on - strand, within yfaL at 4505.969 kb on + strand, within yfaL at 4505.970 kb on - strand, within yfaL at 4506.011 kb on + strand, within yfaL at 4506.102 kb on + strand, within yfaL at 4506.103 kb on - strand, within yfaL at 4506.109 kb on - strand, within yfaL at 4506.242 kb on + strand, within yfaL at 4506.650 kb on + strand, within yfaL at 4506.663 kb on + strand, within yfaL at 4506.808 kb on - strand at 4506.808 kb on - strand at 4506.931 kb on + strand at 4506.932 kb on - strand at 4506.941 kb on - strand at 4506.954 kb on + strand at 4507.176 kb on + strand at 4507.211 kb on + strand at 4507.211 kb on + strand at 4507.227 kb on - strand at 4508.038 kb on - strand at 4508.059 kb on + strand at 4508.059 kb on + strand at 4508.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,503,000 - +0.9 4,503,190 - +0.6 4,503,620 + +1.6 4,504,086 - yfaL OKFHMN_23120 0.18 +0.7 4,504,134 + yfaL OKFHMN_23120 0.19 +1.4 4,504,136 + yfaL OKFHMN_23120 0.19 +0.1 4,504,163 + yfaL OKFHMN_23120 0.20 -0.3 4,504,163 + yfaL OKFHMN_23120 0.20 +0.6 4,504,274 + yfaL OKFHMN_23120 0.23 -1.1 4,504,274 + yfaL OKFHMN_23120 0.23 -0.8 4,504,278 + yfaL OKFHMN_23120 0.23 -0.2 4,504,288 + yfaL OKFHMN_23120 0.24 -0.6 4,504,299 - yfaL OKFHMN_23120 0.24 +0.5 4,504,340 + yfaL OKFHMN_23120 0.25 -0.1 4,504,427 + yfaL OKFHMN_23120 0.27 +0.3 4,504,439 + yfaL OKFHMN_23120 0.28 -0.8 4,504,562 + yfaL OKFHMN_23120 0.31 -1.2 4,504,562 + yfaL OKFHMN_23120 0.31 +0.8 4,504,568 + yfaL OKFHMN_23120 0.31 +0.4 4,504,654 + yfaL OKFHMN_23120 0.33 -0.2 4,504,679 + yfaL OKFHMN_23120 0.34 -1.9 4,504,680 - yfaL OKFHMN_23120 0.34 -0.1 4,504,685 + yfaL OKFHMN_23120 0.34 +0.7 4,504,686 - yfaL OKFHMN_23120 0.34 -0.4 4,504,753 - yfaL OKFHMN_23120 0.36 +0.5 4,504,795 + yfaL OKFHMN_23120 0.37 +0.2 4,504,796 - yfaL OKFHMN_23120 0.37 +0.1 4,504,932 - yfaL OKFHMN_23120 0.41 +0.7 4,504,938 + yfaL OKFHMN_23120 0.41 -0.8 4,504,938 + yfaL OKFHMN_23120 0.41 -0.1 4,505,022 - yfaL OKFHMN_23120 0.43 -0.2 4,505,022 - yfaL OKFHMN_23120 0.43 +0.1 4,505,174 + yfaL OKFHMN_23120 0.47 -0.4 4,505,174 + yfaL OKFHMN_23120 0.47 -0.8 4,505,181 + yfaL OKFHMN_23120 0.47 -0.3 4,505,208 - yfaL OKFHMN_23120 0.48 -0.4 4,505,259 - yfaL OKFHMN_23120 0.49 +1.0 4,505,458 + yfaL OKFHMN_23120 0.55 -0.3 4,505,502 + yfaL OKFHMN_23120 0.56 +0.2 4,505,503 - yfaL OKFHMN_23120 0.56 -0.1 4,505,515 + yfaL OKFHMN_23120 0.56 -0.3 4,505,669 + yfaL OKFHMN_23120 0.60 +0.8 4,505,729 + yfaL OKFHMN_23120 0.62 -0.5 4,505,729 + yfaL OKFHMN_23120 0.62 -0.9 4,505,758 - yfaL OKFHMN_23120 0.63 -0.7 4,505,795 + yfaL OKFHMN_23120 0.64 -0.7 4,505,796 - yfaL OKFHMN_23120 0.64 -1.8 4,505,878 + yfaL OKFHMN_23120 0.66 +0.2 4,505,879 - yfaL OKFHMN_23120 0.66 +1.7 4,505,969 + yfaL OKFHMN_23120 0.68 +0.5 4,505,970 - yfaL OKFHMN_23120 0.68 -0.9 4,506,011 + yfaL OKFHMN_23120 0.69 -1.1 4,506,102 + yfaL OKFHMN_23120 0.72 -0.2 4,506,103 - yfaL OKFHMN_23120 0.72 +0.2 4,506,109 - yfaL OKFHMN_23120 0.72 +0.3 4,506,242 + yfaL OKFHMN_23120 0.76 -0.0 4,506,650 + yfaL OKFHMN_23120 0.86 -0.7 4,506,663 + yfaL OKFHMN_23120 0.87 -0.3 4,506,808 - -0.8 4,506,808 - -0.6 4,506,931 + -0.1 4,506,932 - +0.6 4,506,941 - +2.2 4,506,954 + +1.0 4,507,176 + -0.4 4,507,211 + +0.5 4,507,211 + -0.2 4,507,227 - +0.6 4,508,038 - +0.4 4,508,059 + -2.1 4,508,059 + -1.4 4,508,060 - -0.0
Or see this region's nucleotide sequence