Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_22415 and yfdE are separated by 32 nucleotides yfdE and evgS are separated by 55 nucleotides evgS and evgA are separated by 4 nucleotides evgA and evgL overlap by 4 nucleotides
OKFHMN_22415: OKFHMN_22415 - CoA-transferase, at 4,357,279 to 4,357,509
_22415
OKFHMN_22420: yfdE - CoA:oxalate CoA-transferase, at 4,357,542 to 4,358,420
yfdE
OKFHMN_22425: evgS - acid-sensing system histidine kinase EvgS, at 4,358,476 to 4,362,069
evgS
OKFHMN_22430: evgA - acid-sensing system DNA-binding response regulator EvgA, at 4,362,074 to 4,362,688
evgA
OKFHMN_22435: evgL - Protein EvgL, at 4,362,685 to 4,362,714
evgL
Position (kb) 4358
4359
4360
4361
4362
4363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4357.645 kb on + strand, within yfdE at 4357.647 kb on + strand, within yfdE at 4357.647 kb on + strand, within yfdE at 4357.795 kb on + strand, within yfdE at 4357.931 kb on + strand, within yfdE at 4357.931 kb on + strand, within yfdE at 4357.977 kb on + strand, within yfdE at 4358.153 kb on + strand, within yfdE at 4358.236 kb on + strand, within yfdE at 4358.305 kb on + strand, within yfdE at 4358.597 kb on - strand at 4358.608 kb on - strand at 4358.682 kb on + strand at 4358.728 kb on - strand at 4358.860 kb on + strand, within evgS at 4358.875 kb on + strand, within evgS at 4358.905 kb on + strand, within evgS at 4358.906 kb on - strand, within evgS at 4359.051 kb on + strand, within evgS at 4359.127 kb on + strand, within evgS at 4359.155 kb on - strand, within evgS at 4359.572 kb on - strand, within evgS at 4359.611 kb on + strand, within evgS at 4359.628 kb on - strand, within evgS at 4359.697 kb on + strand, within evgS at 4359.697 kb on + strand, within evgS at 4359.890 kb on - strand, within evgS at 4360.282 kb on - strand, within evgS at 4360.378 kb on - strand, within evgS at 4360.573 kb on - strand, within evgS at 4361.711 kb on - strand at 4361.789 kb on - strand at 4361.915 kb on - strand at 4361.923 kb on + strand at 4362.556 kb on + strand, within evgA at 4362.812 kb on - strand at 4362.833 kb on + strand at 4362.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,357,645 + yfdE OKFHMN_22420 0.12 +0.0 4,357,647 + yfdE OKFHMN_22420 0.12 -0.0 4,357,647 + yfdE OKFHMN_22420 0.12 +0.9 4,357,795 + yfdE OKFHMN_22420 0.29 -0.4 4,357,931 + yfdE OKFHMN_22420 0.44 -0.3 4,357,931 + yfdE OKFHMN_22420 0.44 +0.2 4,357,977 + yfdE OKFHMN_22420 0.49 -0.6 4,358,153 + yfdE OKFHMN_22420 0.70 -0.6 4,358,236 + yfdE OKFHMN_22420 0.79 -0.7 4,358,305 + yfdE OKFHMN_22420 0.87 +2.0 4,358,597 - -0.2 4,358,608 - +0.2 4,358,682 + -0.5 4,358,728 - +0.2 4,358,860 + evgS OKFHMN_22425 0.11 -0.5 4,358,875 + evgS OKFHMN_22425 0.11 -2.5 4,358,905 + evgS OKFHMN_22425 0.12 +0.1 4,358,906 - evgS OKFHMN_22425 0.12 -0.1 4,359,051 + evgS OKFHMN_22425 0.16 +0.7 4,359,127 + evgS OKFHMN_22425 0.18 -0.9 4,359,155 - evgS OKFHMN_22425 0.19 +1.2 4,359,572 - evgS OKFHMN_22425 0.30 +0.1 4,359,611 + evgS OKFHMN_22425 0.32 +0.4 4,359,628 - evgS OKFHMN_22425 0.32 -0.9 4,359,697 + evgS OKFHMN_22425 0.34 -0.6 4,359,697 + evgS OKFHMN_22425 0.34 +0.5 4,359,890 - evgS OKFHMN_22425 0.39 +0.8 4,360,282 - evgS OKFHMN_22425 0.50 -0.3 4,360,378 - evgS OKFHMN_22425 0.53 -0.3 4,360,573 - evgS OKFHMN_22425 0.58 -0.7 4,361,711 - -0.3 4,361,789 - +0.2 4,361,915 - +0.1 4,361,923 + +0.2 4,362,556 + evgA OKFHMN_22430 0.78 +0.7 4,362,812 - +0.3 4,362,833 + -1.3 4,362,899 - -0.1
Or see this region's nucleotide sequence