Strain Fitness in Escherichia coli ECRC100 around OKFHMN_21830

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nturaA and OKFHMN_21825 are separated by 49 nucleotidesOKFHMN_21825 and arsC are separated by 137 nucleotidesarsC and bepA are separated by 20 nucleotides OKFHMN_21820: uraA - uracil permease, at 4,238,276 to 4,239,565 uraA OKFHMN_21825: OKFHMN_21825 - DnaA regulatory inactivator Hda, at 4,239,615 to 4,240,361 _21825 OKFHMN_21830: arsC - arsenate reductase (glutaredoxin), at 4,240,499 to 4,240,858 arsC OKFHMN_21835: bepA - beta-barrel assembly-enhancing protease, at 4,240,879 to 4,242,342 bepA Position (kb) 4240 4241Strain fitness (log2 ratio) -1 0 1at 4239.502 kb on + strandat 4239.503 kb on - strandat 4239.503 kb on - strandat 4239.552 kb on + strandat 4239.552 kb on + strandat 4239.553 kb on - strandat 4239.553 kb on - strandat 4239.563 kb on + strandat 4239.568 kb on + strandat 4240.359 kb on + strandat 4240.363 kb on + strandat 4240.407 kb on + strandat 4240.443 kb on - strandat 4240.483 kb on - strandat 4240.517 kb on + strandat 4240.880 kb on + strandat 4240.881 kb on - strandat 4240.890 kb on + strandat 4240.890 kb on + strandat 4240.899 kb on + strandat 4240.943 kb on + strandat 4241.124 kb on + strand, within bepAat 4241.124 kb on + strand, within bepAat 4241.131 kb on - strand, within bepAat 4241.152 kb on - strand, within bepAat 4241.152 kb on - strand, within bepAat 4241.310 kb on - strand, within bepAat 4241.392 kb on + strand, within bepAat 4241.487 kb on + strand, within bepAat 4241.489 kb on + strand, within bepAat 4241.563 kb on - strand, within bepA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,239,502 + -0.1
4,239,503 - +1.5
4,239,503 - -0.2
4,239,552 + -0.6
4,239,552 + -0.2
4,239,553 - +1.2
4,239,553 - +0.3
4,239,563 + +0.4
4,239,568 + -0.8
4,240,359 + +0.1
4,240,363 + -1.6
4,240,407 + +1.6
4,240,443 - -0.4
4,240,483 - +0.1
4,240,517 + -0.3
4,240,880 + -0.0
4,240,881 - +0.5
4,240,890 + +0.0
4,240,890 + -0.3
4,240,899 + +0.0
4,240,943 + -0.3
4,241,124 + bepA OKFHMN_21835 0.17 +0.1
4,241,124 + bepA OKFHMN_21835 0.17 +1.1
4,241,131 - bepA OKFHMN_21835 0.17 -1.0
4,241,152 - bepA OKFHMN_21835 0.19 +0.4
4,241,152 - bepA OKFHMN_21835 0.19 +0.7
4,241,310 - bepA OKFHMN_21835 0.29 +0.5
4,241,392 + bepA OKFHMN_21835 0.35 +0.1
4,241,487 + bepA OKFHMN_21835 0.42 -0.7
4,241,489 + bepA OKFHMN_21835 0.42 +0.4
4,241,563 - bepA OKFHMN_21835 0.47 -0.2

Or see this region's nucleotide sequence