Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20105

Experiment: Bas69

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas69
3,908,452	+	tcdA	OKFHMN_20095	0.38	+0.6
3,908,452	+	tcdA	OKFHMN_20095	0.38	+1.0
3,908,518	-	tcdA	OKFHMN_20095	0.46	+1.0
3,908,738	+	tcdA	OKFHMN_20095	0.73	+0.2
3,908,798	+	tcdA	OKFHMN_20095	0.81	+0.1
3,909,006	+				-1.3
3,909,028	+				-0.4
3,909,050	+	csdE	OKFHMN_20100	0.10	+0.4
3,909,050	+	csdE	OKFHMN_20100	0.10	-1.0
3,909,051	-	csdE	OKFHMN_20100	0.10	+0.4
3,909,073	+	csdE	OKFHMN_20100	0.15	-0.9
3,909,188	+	csdE	OKFHMN_20100	0.41	+2.1
3,909,189	-	csdE	OKFHMN_20100	0.41	+0.0
3,909,190	+	csdE	OKFHMN_20100	0.42	+0.4
3,909,242	-	csdE	OKFHMN_20100	0.53	+0.6
3,909,242	-	csdE	OKFHMN_20100	0.53	+0.6
3,909,283	+	csdE	OKFHMN_20100	0.63	-1.0
3,909,353	-	csdE	OKFHMN_20100	0.78	+0.1
3,909,383	-	csdE	OKFHMN_20100	0.85	-1.5
3,909,460	+				+0.3
3,909,513	+				-0.1
3,909,513	+				-0.2
3,909,513	+				+0.7
3,909,516	+				+2.4
3,909,516	+				+0.3
3,909,517	-				-0.6
3,909,519	-				-0.4
3,909,557	-				+0.1
3,909,743	-	csdA	OKFHMN_20105	0.24	-2.1
3,909,747	+	csdA	OKFHMN_20105	0.25	+0.1
3,909,747	+	csdA	OKFHMN_20105	0.25	-0.6
3,909,748	-	csdA	OKFHMN_20105	0.25	+1.1
3,909,808	+	csdA	OKFHMN_20105	0.30	+0.8
3,909,814	+	csdA	OKFHMN_20105	0.30	+0.1
3,909,983	+	csdA	OKFHMN_20105	0.44	+1.2
3,909,984	-	csdA	OKFHMN_20105	0.44	-0.5
3,910,007	+	csdA	OKFHMN_20105	0.46	+2.2
3,910,072	+	csdA	OKFHMN_20105	0.52	+0.5
3,910,173	+	csdA	OKFHMN_20105	0.60	+0.9
3,910,317	+	csdA	OKFHMN_20105	0.72	-0.5
3,910,405	-	csdA	OKFHMN_20105	0.79	-0.9
3,910,410	+	csdA	OKFHMN_20105	0.80	+0.3
3,910,429	+	csdA	OKFHMN_20105	0.81	+1.2
3,910,430	-	csdA	OKFHMN_20105	0.81	+0.1
3,910,527	-	csdA	OKFHMN_20105	0.89	+0.8
3,910,563	+				-0.1
3,910,564	-				+0.1
3,910,607	-				-0.2
3,910,702	+				-0.5
3,910,764	+				+0.2
3,910,764	+				+1.1
3,910,764	+				+0.1
3,910,765	-				-1.5
3,910,773	+				+0.7
3,910,774	-				+0.2
3,910,779	+				-0.4
3,910,780	-				+0.8
3,910,801	-				-0.3
3,910,807	+				-0.5
3,910,810	+				+1.4
3,910,811	-				+0.1
3,910,811	-				-0.0
3,910,821	-				-0.4
3,910,866	-				-1.2
3,910,877	+	ygdI	OKFHMN_20110	0.14	-1.0
3,910,877	+	ygdI	OKFHMN_20110	0.14	-0.3
3,910,877	+	ygdI	OKFHMN_20110	0.14	+0.1
3,910,878	-	ygdI	OKFHMN_20110	0.14	-0.2
3,910,917	+	ygdI	OKFHMN_20110	0.32	-0.2
3,910,917	+	ygdI	OKFHMN_20110	0.32	+1.1
3,910,917	+	ygdI	OKFHMN_20110	0.32	-0.2
3,910,943	+	ygdI	OKFHMN_20110	0.43	-0.9
3,910,943	+	ygdI	OKFHMN_20110	0.43	+0.6
3,911,000	+	ygdI	OKFHMN_20110	0.68	+0.7
3,911,001	-	ygdI	OKFHMN_20110	0.68	-0.0
3,911,001	-	ygdI	OKFHMN_20110	0.68	+0.9
3,911,001	-	ygdI	OKFHMN_20110	0.68	+2.1
3,911,070	+				+3.8
3,911,117	+				-1.3
3,911,145	-				-0.2
3,911,145	-				+0.0
3,911,151	-				-0.5
3,911,170	-				-0.8
3,911,179	-				+0.8
3,911,306	-				-1.6
3,911,306	-				-0.6
3,911,306	-				-1.1
3,911,310	-				+0.3
3,911,310	-				-0.4
3,911,320	-				+0.3
3,911,445	+				-0.1
3,911,484	+				-1.3
3,911,484	+				+1.4
3,911,532	+	gcvA	OKFHMN_20120	0.12	-0.5
3,911,532	+	gcvA	OKFHMN_20120	0.12	-0.0
3,911,627	+	gcvA	OKFHMN_20120	0.22	-0.1
3,911,627	+	gcvA	OKFHMN_20120	0.22	+0.7
3,911,628	-	gcvA	OKFHMN_20120	0.22	-0.7