Strain Fitness in Escherichia coli ECRC100 around OKFHMN_19810

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntflhB and csgD are separated by 356 nucleotidescsgD and OKFHMN_19815 are separated by 703 nucleotides OKFHMN_19805: flhB - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 3,852,435 to 3,853,556 flhB OKFHMN_19810: csgD - LuxR family transcriptional regulator, at 3,853,913 to 3,854,413 csgD OKFHMN_19815: OKFHMN_19815 - Type III secretion protein EprH, at 3,855,117 to 3,855,851 _19815 Position (kb) 3853 3854 3855Strain fitness (log2 ratio) -1 0 1at 3853.294 kb on + strand, within flhBat 3853.875 kb on + strandat 3854.111 kb on + strand, within csgDat 3854.452 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
3,853,294 + flhB OKFHMN_19805 0.77 -0.3
3,853,875 + -1.0
3,854,111 + csgD OKFHMN_19810 0.40 +0.7
3,854,452 + -1.3

Or see this region's nucleotide sequence