Strain Fitness in Escherichia coli ECRC100 around OKFHMN_18020

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispB and rplU are separated by 258 nucleotidesrplU and rpmA are separated by 20 nucleotidesrpmA and yhbE are separated by 126 nucleotides OKFHMN_18015: ispB - octaprenyl diphosphate synthase, at 3,499,363 to 3,500,334 ispB OKFHMN_18020: rplU - 50S ribosomal protein L21, at 3,500,593 to 3,500,904 rplU OKFHMN_18025: rpmA - 50S ribosomal protein L27, at 3,500,925 to 3,501,182 rpmA OKFHMN_18030: yhbE - Uncharacterized inner membrane transporter YhbE, at 3,501,309 to 3,502,274 yhbE Position (kb) 3500 3501Strain fitness (log2 ratio) -2 -1 0 1at 3500.368 kb on - strandat 3500.388 kb on - strandat 3500.407 kb on - strandat 3500.407 kb on - strandat 3500.407 kb on - strandat 3500.409 kb on - strandat 3500.409 kb on - strandat 3500.451 kb on + strandat 3500.451 kb on + strandat 3500.451 kb on + strandat 3500.486 kb on + strandat 3500.487 kb on - strandat 3501.237 kb on + strandat 3501.303 kb on + strandat 3501.429 kb on + strand, within yhbEat 3501.591 kb on + strand, within yhbEat 3501.591 kb on + strand, within yhbEat 3501.658 kb on + strand, within yhbEat 3501.761 kb on + strand, within yhbEat 3501.761 kb on + strand, within yhbEat 3501.761 kb on + strand, within yhbEat 3501.761 kb on + strand, within yhbEat 3501.791 kb on + strand, within yhbEat 3501.791 kb on + strand, within yhbEat 3501.851 kb on - strand, within yhbE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,500,368 - -0.6
3,500,388 - +0.2
3,500,407 - -1.6
3,500,407 - -0.7
3,500,407 - -0.0
3,500,409 - +0.1
3,500,409 - +1.6
3,500,451 + -1.9
3,500,451 + -0.6
3,500,451 + -1.7
3,500,486 + -2.4
3,500,487 - +0.8
3,501,237 + -1.1
3,501,303 + +1.0
3,501,429 + yhbE OKFHMN_18030 0.12 -0.3
3,501,591 + yhbE OKFHMN_18030 0.29 +0.2
3,501,591 + yhbE OKFHMN_18030 0.29 -1.3
3,501,658 + yhbE OKFHMN_18030 0.36 +0.2
3,501,761 + yhbE OKFHMN_18030 0.47 -0.0
3,501,761 + yhbE OKFHMN_18030 0.47 -1.0
3,501,761 + yhbE OKFHMN_18030 0.47 -0.3
3,501,761 + yhbE OKFHMN_18030 0.47 -0.4
3,501,791 + yhbE OKFHMN_18030 0.50 +0.6
3,501,791 + yhbE OKFHMN_18030 0.50 -0.7
3,501,851 - yhbE OKFHMN_18030 0.56 -0.6

Or see this region's nucleotide sequence