Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_15150 and ilvN are separated by 3 nucleotides ilvN and OKFHMN_15160 are separated by 262 nucleotides OKFHMN_15160 and OKFHMN_15165 are separated by 147 nucleotides OKFHMN_15165 and OKFHMN_15170 are separated by 277 nucleotides
OKFHMN_15150: OKFHMN_15150 - Acetolactate synthase, at 2,931,820 to 2,933,508
_15150
OKFHMN_15155: ilvN - acetolactate synthase small subunit, at 2,933,512 to 2,933,802
ilvN
OKFHMN_15160: OKFHMN_15160 - hypothetical protein, at 2,934,065 to 2,934,718
_15160
OKFHMN_15165: OKFHMN_15165 - hypothetical protein, at 2,934,866 to 2,935,348
_15165
OKFHMN_15170: OKFHMN_15170 - hypothetical protein, at 2,935,626 to 2,935,940
_15170
Position (kb)
2934
2935 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2933.295 kb on + strand, within OKFHMN_15150 at 2933.296 kb on - strand, within OKFHMN_15150 at 2933.506 kb on + strand at 2933.573 kb on + strand, within ilvN at 2933.574 kb on - strand, within ilvN at 2933.613 kb on + strand, within ilvN at 2933.665 kb on - strand, within ilvN at 2933.709 kb on - strand, within ilvN at 2933.775 kb on + strand at 2933.851 kb on + strand at 2933.865 kb on + strand at 2933.866 kb on - strand at 2933.866 kb on - strand at 2933.867 kb on + strand at 2934.008 kb on + strand at 2934.009 kb on - strand at 2934.275 kb on - strand, within OKFHMN_15160 at 2934.284 kb on + strand, within OKFHMN_15160 at 2934.285 kb on - strand, within OKFHMN_15160 at 2934.296 kb on - strand, within OKFHMN_15160 at 2934.604 kb on + strand, within OKFHMN_15160 at 2934.723 kb on + strand at 2935.261 kb on + strand, within OKFHMN_15165 at 2935.371 kb on + strand at 2935.452 kb on + strand at 2935.452 kb on + strand at 2935.453 kb on - strand at 2935.453 kb on - strand at 2935.462 kb on + strand at 2935.462 kb on + strand at 2935.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 2,933,295 + OKFHMN_15150 0.87 -0.3 2,933,296 - OKFHMN_15150 0.87 +0.2 2,933,506 + -1.6 2,933,573 + ilvN OKFHMN_15155 0.21 -1.0 2,933,574 - ilvN OKFHMN_15155 0.21 +1.1 2,933,613 + ilvN OKFHMN_15155 0.35 +0.1 2,933,665 - ilvN OKFHMN_15155 0.53 +0.2 2,933,709 - ilvN OKFHMN_15155 0.68 +1.9 2,933,775 + -0.6 2,933,851 + -0.2 2,933,865 + +1.4 2,933,866 - -0.3 2,933,866 - -0.4 2,933,867 + -1.6 2,934,008 + -0.1 2,934,009 - +0.3 2,934,275 - OKFHMN_15160 0.32 -0.8 2,934,284 + OKFHMN_15160 0.33 +0.8 2,934,285 - OKFHMN_15160 0.34 +0.0 2,934,296 - OKFHMN_15160 0.35 -0.2 2,934,604 + OKFHMN_15160 0.82 +0.8 2,934,723 + -1.0 2,935,261 + OKFHMN_15165 0.82 +0.1 2,935,371 + -0.4 2,935,452 + +0.4 2,935,452 + +3.6 2,935,453 - +0.6 2,935,453 - +1.0 2,935,462 + -0.5 2,935,462 + -0.2 2,935,577 + -0.0
Or see this region's nucleotide sequence