Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14220

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt23S_rrna and Ala_trna are separated by 183 nucleotidesAla_trna and Ile_trna are separated by 42 nucleotidesIle_trna and 16S_rrna are separated by 68 nucleotides16S_rrna and hemG are separated by 380 nucleotideshemG and trkH are separated by 11 nucleotides OKFHMN_14200: 23S_rrna - 23S ribosomal RNA, at 2,738,496 to 2,741,400 _rrna OKFHMN_14210: Ala_trna - tRNA-Ala(tgc), at 2,741,584 to 2,741,659 _trna OKFHMN_14215: Ile_trna - tRNA-Ile(gat), at 2,741,702 to 2,741,778 _trna OKFHMN_14220: 16S_rrna - 16S ribosomal RNA, at 2,741,847 to 2,743,388 _rrna OKFHMN_14225: hemG - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 2,743,769 to 2,744,314 hemG OKFHMN_14230: trkH - Trk system potassium transporter TrkH, at 2,744,326 to 2,745,777 trkH Position (kb) 2741 2742 2743 2744Strain fitness (log2 ratio) -1 0 1 2at 2741.843 kb on - strandat 2741.848 kb on - strandat 2743.771 kb on - strandat 2744.316 kb on + strandat 2744.316 kb on + strandat 2744.317 kb on - strandat 2744.317 kb on - strandat 2744.317 kb on - strandat 2744.319 kb on + strandat 2744.319 kb on + strandat 2744.319 kb on + strandat 2744.320 kb on - strandat 2744.320 kb on - strandat 2744.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,741,843 - -0.1
2,741,848 - -1.2
2,743,771 - +1.2
2,744,316 + +0.0
2,744,316 + +0.6
2,744,317 - +1.5
2,744,317 - +0.3
2,744,317 - +2.0
2,744,319 + +0.1
2,744,319 + -1.2
2,744,319 + -0.3
2,744,320 - +0.3
2,744,320 - -1.3
2,744,320 - -0.7

Or see this region's nucleotide sequence