Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13415

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_13410 and rpoC are separated by 212 nucleotidesrpoC and rpoB_R687H are separated by 76 nucleotides OKFHMN_13410: OKFHMN_13410 - stationary phase growth adaptation protein, at 2,575,917 to 2,576,360 _13410 OKFHMN_13415: rpoC - DNA-directed RNA polymerase subunit beta', at 2,576,573 to 2,580,796 rpoC OKFHMN_13420: rpoB_R687H - DNA-directed RNA polymerase subunit beta RpoB, at 2,580,873 to 2,584,901 _R687H Position (kb) 2576 2577 2578 2579 2580 2581Strain fitness (log2 ratio) -2 -1 0 1at 2575.698 kb on + strandat 2575.699 kb on - strandat 2575.706 kb on + strandat 2575.707 kb on - strandat 2575.707 kb on - strandat 2575.710 kb on + strandat 2575.718 kb on + strandat 2575.719 kb on - strandat 2575.855 kb on + strandat 2575.878 kb on + strandat 2575.878 kb on + strandat 2575.919 kb on - strandat 2576.004 kb on + strand, within OKFHMN_13410at 2576.005 kb on - strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.026 kb on + strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.027 kb on - strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.030 kb on + strand, within OKFHMN_13410at 2576.031 kb on - strand, within OKFHMN_13410at 2576.085 kb on + strand, within OKFHMN_13410at 2576.105 kb on + strand, within OKFHMN_13410at 2576.106 kb on - strand, within OKFHMN_13410at 2576.149 kb on + strand, within OKFHMN_13410at 2576.150 kb on - strand, within OKFHMN_13410at 2576.150 kb on - strand, within OKFHMN_13410at 2576.160 kb on + strand, within OKFHMN_13410at 2576.161 kb on - strand, within OKFHMN_13410at 2576.188 kb on + strand, within OKFHMN_13410at 2576.189 kb on - strand, within OKFHMN_13410at 2576.215 kb on + strand, within OKFHMN_13410at 2576.215 kb on + strand, within OKFHMN_13410at 2576.216 kb on - strand, within OKFHMN_13410at 2576.239 kb on - strand, within OKFHMN_13410at 2576.273 kb on + strand, within OKFHMN_13410at 2576.390 kb on + strandat 2576.391 kb on - strandat 2576.391 kb on - strandat 2576.391 kb on - strandat 2576.391 kb on - strandat 2576.393 kb on + strandat 2576.393 kb on + strandat 2576.422 kb on + strandat 2576.423 kb on - strandat 2576.442 kb on + strandat 2576.445 kb on + strandat 2576.446 kb on - strandat 2576.446 kb on - strandat 2576.455 kb on + strandat 2576.456 kb on - strandat 2576.464 kb on + strandat 2576.470 kb on + strandat 2576.470 kb on + strandat 2576.489 kb on + strandat 2576.526 kb on - strandat 2576.552 kb on - strandat 2576.690 kb on - strandat 2576.690 kb on - strandat 2576.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,575,698 + +0.4
2,575,699 - +0.3
2,575,706 + +0.6
2,575,707 - +0.4
2,575,707 - +0.7
2,575,710 + +0.7
2,575,718 + +0.3
2,575,719 - -1.6
2,575,855 + -0.3
2,575,878 + -0.2
2,575,878 + -0.7
2,575,919 - -0.8
2,576,004 + OKFHMN_13410 0.20 +0.1
2,576,005 - OKFHMN_13410 0.20 +0.5
2,576,026 + OKFHMN_13410 0.25 -0.7
2,576,026 + OKFHMN_13410 0.25 -0.3
2,576,026 + OKFHMN_13410 0.25 +0.8
2,576,026 + OKFHMN_13410 0.25 -0.2
2,576,027 - OKFHMN_13410 0.25 -0.5
2,576,027 - OKFHMN_13410 0.25 -0.8
2,576,027 - OKFHMN_13410 0.25 +0.3
2,576,027 - OKFHMN_13410 0.25 -1.3
2,576,027 - OKFHMN_13410 0.25 +1.0
2,576,027 - OKFHMN_13410 0.25 +1.3
2,576,027 - OKFHMN_13410 0.25 -0.4
2,576,030 + OKFHMN_13410 0.25 +0.5
2,576,030 + OKFHMN_13410 0.25 +0.4
2,576,030 + OKFHMN_13410 0.25 -0.3
2,576,030 + OKFHMN_13410 0.25 +0.6
2,576,030 + OKFHMN_13410 0.25 -0.1
2,576,030 + OKFHMN_13410 0.25 +0.2
2,576,031 - OKFHMN_13410 0.26 -0.2
2,576,085 + OKFHMN_13410 0.38 -0.1
2,576,105 + OKFHMN_13410 0.42 +0.1
2,576,106 - OKFHMN_13410 0.43 +0.8
2,576,149 + OKFHMN_13410 0.52 +0.3
2,576,150 - OKFHMN_13410 0.52 -1.5
2,576,150 - OKFHMN_13410 0.52 +0.4
2,576,160 + OKFHMN_13410 0.55 +0.5
2,576,161 - OKFHMN_13410 0.55 -0.4
2,576,188 + OKFHMN_13410 0.61 -1.2
2,576,189 - OKFHMN_13410 0.61 +1.0
2,576,215 + OKFHMN_13410 0.67 +0.1
2,576,215 + OKFHMN_13410 0.67 -0.0
2,576,216 - OKFHMN_13410 0.67 +0.7
2,576,239 - OKFHMN_13410 0.73 -1.9
2,576,273 + OKFHMN_13410 0.80 -0.6
2,576,390 + -0.2
2,576,391 - -0.1
2,576,391 - -0.1
2,576,391 - -0.2
2,576,391 - +0.1
2,576,393 + -0.4
2,576,393 + -0.0
2,576,422 + +0.0
2,576,423 - +0.3
2,576,442 + +0.9
2,576,445 + +0.4
2,576,446 - +0.0
2,576,446 - -0.2
2,576,455 + -0.3
2,576,456 - -0.5
2,576,464 + -0.6
2,576,470 + -0.1
2,576,470 + +0.5
2,576,489 + +1.2
2,576,526 - -0.2
2,576,552 - +0.8
2,576,690 - -0.0
2,576,690 - +0.6
2,576,704 - +0.0

Or see this region's nucleotide sequence