Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13080

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntplsB and ubiA are separated by 154 nucleotidesubiA and ubiC are separated by 12 nucleotidesubiC and espX4 are separated by 222 nucleotides OKFHMN_13075: plsB - glycerol-3-phosphate 1-O-acyltransferase PlsB, at 2,504,154 to 2,506,577 plsB OKFHMN_13080: ubiA - 4-hydroxybenzoate octaprenyltransferase, at 2,506,732 to 2,507,604 ubiA OKFHMN_13085: ubiC - chorismate lyase, at 2,507,617 to 2,508,114 ubiC OKFHMN_13090: espX4 - Type III secretion system effector EspX4, at 2,508,337 to 2,509,917 espX4 Position (kb) 2506 2507 2508Strain fitness (log2 ratio) -2 -1 0 1 2at 2506.526 kb on + strandat 2506.526 kb on + strandat 2506.726 kb on - strandat 2507.605 kb on - strandat 2507.720 kb on - strand, within ubiCat 2507.720 kb on - strand, within ubiCat 2507.720 kb on - strand, within ubiCat 2507.762 kb on + strand, within ubiCat 2507.782 kb on - strand, within ubiCat 2507.872 kb on + strand, within ubiCat 2508.075 kb on - strandat 2508.133 kb on + strandat 2508.150 kb on - strandat 2508.178 kb on - strandat 2508.178 kb on - strandat 2508.196 kb on + strandat 2508.197 kb on - strandat 2508.234 kb on - strandat 2508.251 kb on + strandat 2508.338 kb on + strandat 2508.338 kb on + strandat 2508.338 kb on + strandat 2508.342 kb on + strandat 2508.349 kb on - strandat 2508.364 kb on - strandat 2508.405 kb on + strandat 2508.406 kb on - strandat 2508.411 kb on - strandat 2508.477 kb on - strandat 2508.481 kb on - strandat 2508.482 kb on + strandat 2508.483 kb on - strandat 2508.483 kb on - strandat 2508.522 kb on + strand, within espX4at 2508.522 kb on + strand, within espX4at 2508.522 kb on + strand, within espX4at 2508.529 kb on + strand, within espX4at 2508.529 kb on + strand, within espX4at 2508.545 kb on - strand, within espX4at 2508.553 kb on - strand, within espX4at 2508.591 kb on + strand, within espX4

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,506,526 + +1.6
2,506,526 + -1.6
2,506,726 - -0.5
2,507,605 - -0.8
2,507,720 - ubiC OKFHMN_13085 0.21 +1.7
2,507,720 - ubiC OKFHMN_13085 0.21 +0.1
2,507,720 - ubiC OKFHMN_13085 0.21 +0.6
2,507,762 + ubiC OKFHMN_13085 0.29 -1.9
2,507,782 - ubiC OKFHMN_13085 0.33 +2.3
2,507,872 + ubiC OKFHMN_13085 0.51 -1.0
2,508,075 - +0.3
2,508,133 + -1.1
2,508,150 - -0.0
2,508,178 - -0.3
2,508,178 - -0.2
2,508,196 + -0.4
2,508,197 - +0.5
2,508,234 - +0.0
2,508,251 + -0.6
2,508,338 + -0.8
2,508,338 + -1.7
2,508,338 + +1.0
2,508,342 + +1.4
2,508,349 - +1.0
2,508,364 - +0.6
2,508,405 + -2.2
2,508,406 - +1.0
2,508,411 - +0.0
2,508,477 - -1.8
2,508,481 - +0.1
2,508,482 + +0.1
2,508,483 - -1.2
2,508,483 - +0.1
2,508,522 + espX4 OKFHMN_13090 0.12 +0.8
2,508,522 + espX4 OKFHMN_13090 0.12 -0.2
2,508,522 + espX4 OKFHMN_13090 0.12 -0.4
2,508,529 + espX4 OKFHMN_13090 0.12 -0.3
2,508,529 + espX4 OKFHMN_13090 0.12 +0.4
2,508,545 - espX4 OKFHMN_13090 0.13 +1.2
2,508,553 - espX4 OKFHMN_13090 0.14 +0.2
2,508,591 + espX4 OKFHMN_13090 0.16 +0.9

Or see this region's nucleotide sequence