Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10715

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntleuO and leuL are separated by 657 nucleotidesleuL and OKFHMN_10715 are separated by 92 nucleotidesOKFHMN_10715 and leuB overlap by 1 nucleotides OKFHMN_10705: leuO - transcriptional regulator LeuO, at 2,013,274 to 2,014,218 leuO OKFHMN_10710: leuL - leu operon leader peptide, at 2,014,876 to 2,014,962 leuL OKFHMN_10715: OKFHMN_10715 - 2-isopropylmalate synthase, at 2,015,055 to 2,016,626 _10715 OKFHMN_10720: leuB - 3-isopropylmalate dehydrogenase, at 2,016,626 to 2,017,717 leuB Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -1 0 1 2at 2014.142 kb on - strandat 2014.222 kb on + strandat 2014.240 kb on + strandat 2014.286 kb on + strandat 2014.398 kb on - strandat 2014.443 kb on - strandat 2014.659 kb on + strandat 2014.683 kb on + strandat 2014.709 kb on - strandat 2014.874 kb on + strandat 2014.904 kb on + strand, within leuLat 2014.904 kb on + strand, within leuLat 2014.907 kb on + strand, within leuLat 2014.910 kb on + strand, within leuLat 2014.914 kb on - strand, within leuLat 2015.012 kb on - strandat 2015.264 kb on - strand, within OKFHMN_10715at 2015.273 kb on - strand, within OKFHMN_10715at 2015.346 kb on - strand, within OKFHMN_10715at 2015.346 kb on - strand, within OKFHMN_10715at 2015.351 kb on + strand, within OKFHMN_10715at 2015.352 kb on - strand, within OKFHMN_10715at 2015.425 kb on - strand, within OKFHMN_10715at 2015.425 kb on - strand, within OKFHMN_10715at 2015.425 kb on - strand, within OKFHMN_10715at 2015.425 kb on - strand, within OKFHMN_10715at 2015.425 kb on - strand, within OKFHMN_10715at 2015.449 kb on - strand, within OKFHMN_10715at 2015.489 kb on + strand, within OKFHMN_10715at 2015.490 kb on - strand, within OKFHMN_10715at 2015.575 kb on - strand, within OKFHMN_10715at 2015.575 kb on - strand, within OKFHMN_10715at 2015.616 kb on + strand, within OKFHMN_10715at 2015.631 kb on - strand, within OKFHMN_10715at 2015.649 kb on - strand, within OKFHMN_10715at 2015.660 kb on + strand, within OKFHMN_10715at 2015.707 kb on + strand, within OKFHMN_10715at 2015.708 kb on - strand, within OKFHMN_10715at 2015.765 kb on + strand, within OKFHMN_10715at 2015.813 kb on + strand, within OKFHMN_10715at 2015.852 kb on - strand, within OKFHMN_10715at 2015.870 kb on - strand, within OKFHMN_10715at 2015.885 kb on + strand, within OKFHMN_10715at 2015.885 kb on + strand, within OKFHMN_10715at 2016.090 kb on + strand, within OKFHMN_10715at 2016.090 kb on + strand, within OKFHMN_10715at 2016.171 kb on + strand, within OKFHMN_10715at 2016.378 kb on + strand, within OKFHMN_10715at 2016.378 kb on + strand, within OKFHMN_10715at 2016.379 kb on - strand, within OKFHMN_10715at 2016.379 kb on - strand, within OKFHMN_10715at 2016.381 kb on - strand, within OKFHMN_10715at 2016.425 kb on + strand, within OKFHMN_10715at 2016.449 kb on + strand, within OKFHMN_10715at 2016.538 kb on + strandat 2016.539 kb on - strandat 2016.539 kb on - strandat 2016.539 kb on - strandat 2016.543 kb on - strandat 2016.543 kb on - strandat 2016.548 kb on + strandat 2016.549 kb on - strandat 2016.638 kb on + strandat 2016.639 kb on - strandat 2016.639 kb on - strandat 2016.759 kb on + strand, within leuBat 2016.877 kb on - strand, within leuBat 2016.966 kb on - strand, within leuBat 2017.059 kb on - strand, within leuBat 2017.098 kb on - strand, within leuBat 2017.124 kb on + strand, within leuBat 2017.124 kb on + strand, within leuBat 2017.178 kb on - strand, within leuBat 2017.190 kb on - strand, within leuBat 2017.271 kb on + strand, within leuBat 2017.294 kb on + strand, within leuBat 2017.294 kb on + strand, within leuBat 2017.295 kb on - strand, within leuBat 2017.295 kb on - strand, within leuBat 2017.295 kb on - strand, within leuBat 2017.298 kb on + strand, within leuBat 2017.298 kb on + strand, within leuBat 2017.298 kb on + strand, within leuBat 2017.299 kb on - strand, within leuBat 2017.299 kb on - strand, within leuBat 2017.299 kb on - strand, within leuBat 2017.299 kb on - strand, within leuBat 2017.463 kb on + strand, within leuBat 2017.557 kb on - strand, within leuBat 2017.614 kb on + strandat 2017.615 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
2,014,142 - -0.2
2,014,222 + +0.4
2,014,240 + +0.0
2,014,286 + +0.9
2,014,398 - -0.2
2,014,443 - -0.3
2,014,659 + -0.7
2,014,683 + -0.3
2,014,709 - +1.1
2,014,874 + -0.6
2,014,904 + leuL OKFHMN_10710 0.32 -1.0
2,014,904 + leuL OKFHMN_10710 0.32 -0.1
2,014,907 + leuL OKFHMN_10710 0.36 -0.6
2,014,910 + leuL OKFHMN_10710 0.39 +0.9
2,014,914 - leuL OKFHMN_10710 0.44 +0.3
2,015,012 - -0.7
2,015,264 - OKFHMN_10715 0.13 +1.3
2,015,273 - OKFHMN_10715 0.14 -1.7
2,015,346 - OKFHMN_10715 0.19 +0.1
2,015,346 - OKFHMN_10715 0.19 +1.9
2,015,351 + OKFHMN_10715 0.19 -0.1
2,015,352 - OKFHMN_10715 0.19 -0.2
2,015,425 - OKFHMN_10715 0.24 +1.3
2,015,425 - OKFHMN_10715 0.24 +0.4
2,015,425 - OKFHMN_10715 0.24 +0.3
2,015,425 - OKFHMN_10715 0.24 +0.9
2,015,425 - OKFHMN_10715 0.24 -0.2
2,015,449 - OKFHMN_10715 0.25 -0.1
2,015,489 + OKFHMN_10715 0.28 +0.1
2,015,490 - OKFHMN_10715 0.28 -1.4
2,015,575 - OKFHMN_10715 0.33 -0.1
2,015,575 - OKFHMN_10715 0.33 -0.3
2,015,616 + OKFHMN_10715 0.36 -0.4
2,015,631 - OKFHMN_10715 0.37 -0.4
2,015,649 - OKFHMN_10715 0.38 +0.3
2,015,660 + OKFHMN_10715 0.38 -1.7
2,015,707 + OKFHMN_10715 0.41 +0.4
2,015,708 - OKFHMN_10715 0.42 +0.2
2,015,765 + OKFHMN_10715 0.45 -0.4
2,015,813 + OKFHMN_10715 0.48 +1.5
2,015,852 - OKFHMN_10715 0.51 +1.9
2,015,870 - OKFHMN_10715 0.52 -0.4
2,015,885 + OKFHMN_10715 0.53 -1.0
2,015,885 + OKFHMN_10715 0.53 +0.1
2,016,090 + OKFHMN_10715 0.66 -0.3
2,016,090 + OKFHMN_10715 0.66 -0.5
2,016,171 + OKFHMN_10715 0.71 +2.6
2,016,378 + OKFHMN_10715 0.84 -0.1
2,016,378 + OKFHMN_10715 0.84 -0.2
2,016,379 - OKFHMN_10715 0.84 +0.9
2,016,379 - OKFHMN_10715 0.84 +0.3
2,016,381 - OKFHMN_10715 0.84 -0.2
2,016,425 + OKFHMN_10715 0.87 -0.2
2,016,449 + OKFHMN_10715 0.89 +2.5
2,016,538 + -0.1
2,016,539 - +0.7
2,016,539 - -1.2
2,016,539 - -0.1
2,016,543 - -0.3
2,016,543 - +0.5
2,016,548 + -0.2
2,016,549 - -0.1
2,016,638 + +1.1
2,016,639 - -0.6
2,016,639 - +0.0
2,016,759 + leuB OKFHMN_10720 0.12 -0.1
2,016,877 - leuB OKFHMN_10720 0.23 -1.3
2,016,966 - leuB OKFHMN_10720 0.31 +0.3
2,017,059 - leuB OKFHMN_10720 0.40 -1.3
2,017,098 - leuB OKFHMN_10720 0.43 -0.3
2,017,124 + leuB OKFHMN_10720 0.46 -0.1
2,017,124 + leuB OKFHMN_10720 0.46 +1.5
2,017,178 - leuB OKFHMN_10720 0.51 -0.2
2,017,190 - leuB OKFHMN_10720 0.52 -0.3
2,017,271 + leuB OKFHMN_10720 0.59 +0.2
2,017,294 + leuB OKFHMN_10720 0.61 +0.3
2,017,294 + leuB OKFHMN_10720 0.61 -0.2
2,017,295 - leuB OKFHMN_10720 0.61 +0.3
2,017,295 - leuB OKFHMN_10720 0.61 -0.3
2,017,295 - leuB OKFHMN_10720 0.61 -1.0
2,017,298 + leuB OKFHMN_10720 0.62 -0.3
2,017,298 + leuB OKFHMN_10720 0.62 +0.9
2,017,298 + leuB OKFHMN_10720 0.62 +1.3
2,017,299 - leuB OKFHMN_10720 0.62 +0.1
2,017,299 - leuB OKFHMN_10720 0.62 +0.3
2,017,299 - leuB OKFHMN_10720 0.62 -0.2
2,017,299 - leuB OKFHMN_10720 0.62 +0.7
2,017,463 + leuB OKFHMN_10720 0.77 +1.3
2,017,557 - leuB OKFHMN_10720 0.85 +0.4
2,017,614 + -0.3
2,017,615 - -0.8

Or see this region's nucleotide sequence