Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and panB are separated by 134 nucleotides panB and panC are separated by 11 nucleotides
OKFHMN_10395: fimA - fimbrial protein, at 1,947,756 to 1,948,865
fimA
OKFHMN_10400: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,949,000 to 1,949,794
panB
OKFHMN_10405: panC - pantoate--beta-alanine ligase, at 1,949,806 to 1,950,657
panC
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -1
0
1
2
3 at 1948.016 kb on + strand, within fimA at 1948.017 kb on - strand, within fimA at 1948.035 kb on - strand, within fimA at 1948.065 kb on + strand, within fimA at 1948.120 kb on - strand, within fimA at 1948.132 kb on + strand, within fimA at 1948.133 kb on - strand, within fimA at 1948.136 kb on - strand, within fimA at 1948.142 kb on + strand, within fimA at 1948.142 kb on + strand, within fimA at 1948.142 kb on + strand, within fimA at 1948.143 kb on - strand, within fimA at 1948.171 kb on + strand, within fimA at 1948.171 kb on + strand, within fimA at 1948.172 kb on - strand, within fimA at 1948.178 kb on - strand, within fimA at 1948.200 kb on - strand, within fimA at 1948.233 kb on + strand, within fimA at 1948.234 kb on - strand, within fimA at 1948.262 kb on - strand, within fimA at 1948.262 kb on - strand, within fimA at 1948.350 kb on + strand, within fimA at 1948.350 kb on + strand, within fimA at 1948.350 kb on + strand, within fimA at 1948.350 kb on + strand, within fimA at 1948.351 kb on - strand, within fimA at 1948.351 kb on - strand, within fimA at 1948.354 kb on + strand, within fimA at 1948.354 kb on + strand, within fimA at 1948.354 kb on + strand, within fimA at 1948.354 kb on + strand, within fimA at 1948.354 kb on + strand, within fimA at 1948.354 kb on + strand, within fimA at 1948.355 kb on - strand, within fimA at 1948.358 kb on + strand, within fimA at 1948.358 kb on + strand, within fimA at 1948.358 kb on + strand, within fimA at 1948.500 kb on + strand, within fimA at 1948.500 kb on + strand, within fimA at 1948.500 kb on + strand, within fimA at 1948.567 kb on - strand, within fimA at 1948.680 kb on + strand, within fimA at 1948.681 kb on - strand, within fimA at 1948.696 kb on + strand, within fimA at 1948.696 kb on + strand, within fimA at 1948.702 kb on + strand, within fimA at 1948.715 kb on + strand, within fimA at 1948.716 kb on - strand, within fimA at 1948.732 kb on - strand, within fimA at 1948.853 kb on + strand at 1948.853 kb on + strand at 1948.854 kb on - strand at 1948.867 kb on + strand at 1948.929 kb on + strand at 1948.930 kb on - strand at 1948.930 kb on - strand at 1948.930 kb on - strand at 1948.960 kb on + strand at 1948.982 kb on + strand at 1948.982 kb on + strand at 1949.035 kb on + strand at 1949.036 kb on - strand at 1949.036 kb on - strand at 1949.167 kb on + strand, within panB at 1949.168 kb on - strand, within panB at 1949.267 kb on + strand, within panB at 1949.324 kb on - strand, within panB at 1949.324 kb on - strand, within panB at 1949.398 kb on - strand, within panB at 1949.435 kb on - strand, within panB at 1949.491 kb on + strand, within panB at 1949.502 kb on + strand, within panB at 1949.508 kb on + strand, within panB at 1949.509 kb on - strand, within panB at 1949.509 kb on - strand, within panB at 1949.509 kb on - strand, within panB at 1949.570 kb on - strand, within panB at 1949.674 kb on + strand, within panB at 1949.738 kb on + strand at 1949.738 kb on + strand at 1949.738 kb on + strand at 1949.739 kb on - strand at 1949.739 kb on - strand at 1949.740 kb on + strand at 1949.740 kb on + strand at 1949.740 kb on + strand at 1949.740 kb on + strand at 1949.810 kb on + strand at 1949.859 kb on + strand at 1949.889 kb on + strand at 1949.890 kb on - strand at 1949.890 kb on - strand at 1950.101 kb on - strand, within panC at 1950.127 kb on + strand, within panC at 1950.127 kb on + strand, within panC at 1950.128 kb on - strand, within panC at 1950.336 kb on + strand, within panC at 1950.429 kb on - strand, within panC at 1950.480 kb on + strand, within panC at 1950.658 kb on + strand at 1950.658 kb on + strand at 1950.658 kb on + strand at 1950.659 kb on - strand at 1950.662 kb on + strand at 1950.662 kb on + strand at 1950.663 kb on - strand at 1950.663 kb on - strand at 1950.664 kb on + strand at 1950.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,948,016 + fimA OKFHMN_10395 0.23 +0.2 1,948,017 - fimA OKFHMN_10395 0.24 +0.6 1,948,035 - fimA OKFHMN_10395 0.25 +0.2 1,948,065 + fimA OKFHMN_10395 0.28 +0.1 1,948,120 - fimA OKFHMN_10395 0.33 +1.9 1,948,132 + fimA OKFHMN_10395 0.34 -0.4 1,948,133 - fimA OKFHMN_10395 0.34 +0.3 1,948,136 - fimA OKFHMN_10395 0.34 -0.8 1,948,142 + fimA OKFHMN_10395 0.35 +1.0 1,948,142 + fimA OKFHMN_10395 0.35 -0.4 1,948,142 + fimA OKFHMN_10395 0.35 -0.2 1,948,143 - fimA OKFHMN_10395 0.35 +0.0 1,948,171 + fimA OKFHMN_10395 0.37 +1.2 1,948,171 + fimA OKFHMN_10395 0.37 -0.3 1,948,172 - fimA OKFHMN_10395 0.37 -0.4 1,948,178 - fimA OKFHMN_10395 0.38 +0.1 1,948,200 - fimA OKFHMN_10395 0.40 -0.4 1,948,233 + fimA OKFHMN_10395 0.43 +1.2 1,948,234 - fimA OKFHMN_10395 0.43 +0.3 1,948,262 - fimA OKFHMN_10395 0.46 +0.5 1,948,262 - fimA OKFHMN_10395 0.46 -0.9 1,948,350 + fimA OKFHMN_10395 0.54 -0.9 1,948,350 + fimA OKFHMN_10395 0.54 +1.1 1,948,350 + fimA OKFHMN_10395 0.54 -0.7 1,948,350 + fimA OKFHMN_10395 0.54 -0.3 1,948,351 - fimA OKFHMN_10395 0.54 -0.1 1,948,351 - fimA OKFHMN_10395 0.54 -0.2 1,948,354 + fimA OKFHMN_10395 0.54 +1.0 1,948,354 + fimA OKFHMN_10395 0.54 +0.2 1,948,354 + fimA OKFHMN_10395 0.54 +0.1 1,948,354 + fimA OKFHMN_10395 0.54 -0.1 1,948,354 + fimA OKFHMN_10395 0.54 -0.1 1,948,354 + fimA OKFHMN_10395 0.54 -0.1 1,948,355 - fimA OKFHMN_10395 0.54 -1.0 1,948,358 + fimA OKFHMN_10395 0.54 -0.6 1,948,358 + fimA OKFHMN_10395 0.54 -0.2 1,948,358 + fimA OKFHMN_10395 0.54 +0.5 1,948,500 + fimA OKFHMN_10395 0.67 -0.7 1,948,500 + fimA OKFHMN_10395 0.67 +1.1 1,948,500 + fimA OKFHMN_10395 0.67 +0.2 1,948,567 - fimA OKFHMN_10395 0.73 +1.2 1,948,680 + fimA OKFHMN_10395 0.83 -0.7 1,948,681 - fimA OKFHMN_10395 0.83 +0.1 1,948,696 + fimA OKFHMN_10395 0.85 -0.7 1,948,696 + fimA OKFHMN_10395 0.85 -0.1 1,948,702 + fimA OKFHMN_10395 0.85 +0.7 1,948,715 + fimA OKFHMN_10395 0.86 -0.3 1,948,716 - fimA OKFHMN_10395 0.86 +0.9 1,948,732 - fimA OKFHMN_10395 0.88 +1.2 1,948,853 + -0.4 1,948,853 + +0.8 1,948,854 - +0.3 1,948,867 + +0.8 1,948,929 + -0.4 1,948,930 - -1.1 1,948,930 - -0.4 1,948,930 - +0.2 1,948,960 + -0.5 1,948,982 + -0.2 1,948,982 + -0.7 1,949,035 + -1.3 1,949,036 - +0.7 1,949,036 - +0.5 1,949,167 + panB OKFHMN_10400 0.21 +0.3 1,949,168 - panB OKFHMN_10400 0.21 -0.3 1,949,267 + panB OKFHMN_10400 0.34 -0.5 1,949,324 - panB OKFHMN_10400 0.41 +0.6 1,949,324 - panB OKFHMN_10400 0.41 -1.3 1,949,398 - panB OKFHMN_10400 0.50 +0.9 1,949,435 - panB OKFHMN_10400 0.55 -0.1 1,949,491 + panB OKFHMN_10400 0.62 -0.2 1,949,502 + panB OKFHMN_10400 0.63 +0.2 1,949,508 + panB OKFHMN_10400 0.64 +1.3 1,949,509 - panB OKFHMN_10400 0.64 -0.8 1,949,509 - panB OKFHMN_10400 0.64 +0.2 1,949,509 - panB OKFHMN_10400 0.64 -0.5 1,949,570 - panB OKFHMN_10400 0.72 -0.4 1,949,674 + panB OKFHMN_10400 0.85 +0.3 1,949,738 + -0.2 1,949,738 + +0.0 1,949,738 + +0.3 1,949,739 - -0.5 1,949,739 - +0.3 1,949,740 + +0.8 1,949,740 + -0.0 1,949,740 + +0.5 1,949,740 + -0.1 1,949,810 + -0.5 1,949,859 + +0.2 1,949,889 + -1.7 1,949,890 - +0.5 1,949,890 - +0.1 1,950,101 - panC OKFHMN_10405 0.35 +0.3 1,950,127 + panC OKFHMN_10405 0.38 -0.2 1,950,127 + panC OKFHMN_10405 0.38 +1.4 1,950,128 - panC OKFHMN_10405 0.38 -0.1 1,950,336 + panC OKFHMN_10405 0.62 -0.1 1,950,429 - panC OKFHMN_10405 0.73 -0.3 1,950,480 + panC OKFHMN_10405 0.79 -0.8 1,950,658 + +1.6 1,950,658 + +0.4 1,950,658 + +3.3 1,950,659 - +1.2 1,950,662 + -0.4 1,950,662 + -0.2 1,950,663 - +0.6 1,950,663 - -0.1 1,950,664 + -0.7 1,950,783 + -0.4
Or see this region's nucleotide sequence