Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hrpB and thpR are separated by 73 nucleotides thpR and sfsA are separated by 14 nucleotides sfsA and dksA are separated by 177 nucleotides
OKFHMN_10330: hrpB - ATP-dependent helicase HrpB, at 1,934,336 to 1,936,765
hrpB
OKFHMN_10335: thpR - RNA 2',3'-cyclic phosphodiesterase, at 1,936,839 to 1,937,369
thpR
OKFHMN_10340: sfsA - DNA/RNA nuclease SfsA, at 1,937,384 to 1,938,088
sfsA
OKFHMN_10345: dksA - RNA polymerase-binding protein DksA, at 1,938,266 to 1,938,721
dksA
Position (kb) 1936
1937
1938 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1935.842 kb on - strand, within hrpB at 1935.842 kb on - strand, within hrpB at 1935.853 kb on + strand, within hrpB at 1935.854 kb on - strand, within hrpB at 1935.916 kb on + strand, within hrpB at 1935.930 kb on - strand, within hrpB at 1936.030 kb on - strand, within hrpB at 1936.046 kb on + strand, within hrpB at 1936.046 kb on + strand, within hrpB at 1936.046 kb on + strand, within hrpB at 1936.046 kb on + strand, within hrpB at 1936.046 kb on + strand, within hrpB at 1936.046 kb on + strand, within hrpB at 1936.047 kb on - strand, within hrpB at 1936.047 kb on - strand, within hrpB at 1936.047 kb on - strand, within hrpB at 1936.047 kb on - strand, within hrpB at 1936.047 kb on - strand, within hrpB at 1936.047 kb on - strand, within hrpB at 1936.116 kb on - strand, within hrpB at 1936.203 kb on - strand, within hrpB at 1936.303 kb on + strand, within hrpB at 1936.303 kb on + strand, within hrpB at 1936.303 kb on + strand, within hrpB at 1936.304 kb on - strand, within hrpB at 1936.315 kb on + strand, within hrpB at 1936.316 kb on - strand, within hrpB at 1936.381 kb on + strand, within hrpB at 1936.381 kb on + strand, within hrpB at 1936.381 kb on + strand, within hrpB at 1936.381 kb on + strand, within hrpB at 1936.381 kb on + strand, within hrpB at 1936.382 kb on - strand, within hrpB at 1936.382 kb on - strand, within hrpB at 1936.472 kb on + strand, within hrpB at 1936.472 kb on + strand, within hrpB at 1936.473 kb on - strand, within hrpB at 1936.473 kb on - strand, within hrpB at 1936.473 kb on - strand, within hrpB at 1936.692 kb on - strand at 1936.692 kb on - strand at 1936.694 kb on + strand at 1936.695 kb on - strand at 1936.724 kb on - strand at 1936.724 kb on - strand at 1936.727 kb on + strand at 1936.727 kb on + strand at 1936.728 kb on - strand at 1936.737 kb on - strand at 1936.805 kb on + strand at 1936.805 kb on + strand at 1936.805 kb on + strand at 1936.805 kb on + strand at 1936.806 kb on - strand at 1936.806 kb on - strand at 1936.817 kb on - strand at 1936.958 kb on + strand, within thpR at 1937.213 kb on + strand, within thpR at 1937.214 kb on - strand, within thpR at 1937.214 kb on - strand, within thpR at 1937.216 kb on + strand, within thpR at 1937.216 kb on + strand, within thpR at 1937.216 kb on + strand, within thpR at 1937.217 kb on - strand, within thpR at 1937.221 kb on + strand, within thpR at 1937.277 kb on + strand, within thpR at 1937.278 kb on - strand, within thpR at 1937.335 kb on - strand at 1937.367 kb on + strand at 1937.418 kb on + strand at 1937.694 kb on - strand, within sfsA at 1937.695 kb on + strand, within sfsA at 1937.695 kb on + strand, within sfsA at 1937.695 kb on + strand, within sfsA at 1937.696 kb on - strand, within sfsA at 1937.696 kb on - strand, within sfsA at 1937.696 kb on - strand, within sfsA at 1937.750 kb on - strand, within sfsA at 1937.781 kb on - strand, within sfsA at 1937.825 kb on + strand, within sfsA at 1937.938 kb on + strand, within sfsA at 1937.985 kb on + strand, within sfsA at 1937.985 kb on + strand, within sfsA at 1937.986 kb on - strand, within sfsA at 1938.086 kb on + strand at 1938.086 kb on + strand at 1938.086 kb on + strand at 1938.087 kb on - strand at 1938.087 kb on - strand at 1938.087 kb on - strand at 1938.087 kb on - strand at 1938.089 kb on + strand at 1938.094 kb on + strand at 1938.095 kb on - strand at 1938.099 kb on - strand at 1938.111 kb on + strand at 1938.112 kb on - strand at 1938.112 kb on - strand at 1938.112 kb on - strand at 1938.135 kb on - strand at 1938.164 kb on + strand at 1938.164 kb on + strand at 1938.201 kb on - strand at 1938.204 kb on + strand at 1938.204 kb on + strand at 1938.204 kb on + strand at 1938.205 kb on - strand at 1938.205 kb on - strand at 1938.286 kb on + strand at 1938.305 kb on - strand at 1938.356 kb on + strand, within dksA at 1938.357 kb on - strand, within dksA at 1938.358 kb on + strand, within dksA at 1938.358 kb on + strand, within dksA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,935,842 - hrpB OKFHMN_10330 0.62 -1.2 1,935,842 - hrpB OKFHMN_10330 0.62 +0.6 1,935,853 + hrpB OKFHMN_10330 0.62 -0.3 1,935,854 - hrpB OKFHMN_10330 0.62 +0.2 1,935,916 + hrpB OKFHMN_10330 0.65 -1.2 1,935,930 - hrpB OKFHMN_10330 0.66 +0.7 1,936,030 - hrpB OKFHMN_10330 0.70 +0.5 1,936,046 + hrpB OKFHMN_10330 0.70 -0.8 1,936,046 + hrpB OKFHMN_10330 0.70 -0.4 1,936,046 + hrpB OKFHMN_10330 0.70 +0.7 1,936,046 + hrpB OKFHMN_10330 0.70 -1.6 1,936,046 + hrpB OKFHMN_10330 0.70 +0.2 1,936,046 + hrpB OKFHMN_10330 0.70 -0.4 1,936,047 - hrpB OKFHMN_10330 0.70 +0.4 1,936,047 - hrpB OKFHMN_10330 0.70 +0.0 1,936,047 - hrpB OKFHMN_10330 0.70 +1.1 1,936,047 - hrpB OKFHMN_10330 0.70 +0.1 1,936,047 - hrpB OKFHMN_10330 0.70 -0.4 1,936,047 - hrpB OKFHMN_10330 0.70 +0.9 1,936,116 - hrpB OKFHMN_10330 0.73 +0.4 1,936,203 - hrpB OKFHMN_10330 0.77 +0.9 1,936,303 + hrpB OKFHMN_10330 0.81 -0.4 1,936,303 + hrpB OKFHMN_10330 0.81 +0.1 1,936,303 + hrpB OKFHMN_10330 0.81 -0.9 1,936,304 - hrpB OKFHMN_10330 0.81 -1.1 1,936,315 + hrpB OKFHMN_10330 0.81 +0.6 1,936,316 - hrpB OKFHMN_10330 0.81 +1.5 1,936,381 + hrpB OKFHMN_10330 0.84 -2.1 1,936,381 + hrpB OKFHMN_10330 0.84 -1.6 1,936,381 + hrpB OKFHMN_10330 0.84 -0.5 1,936,381 + hrpB OKFHMN_10330 0.84 -0.3 1,936,381 + hrpB OKFHMN_10330 0.84 -0.5 1,936,382 - hrpB OKFHMN_10330 0.84 -0.2 1,936,382 - hrpB OKFHMN_10330 0.84 +0.4 1,936,472 + hrpB OKFHMN_10330 0.88 +0.8 1,936,472 + hrpB OKFHMN_10330 0.88 +0.2 1,936,473 - hrpB OKFHMN_10330 0.88 +0.2 1,936,473 - hrpB OKFHMN_10330 0.88 -0.2 1,936,473 - hrpB OKFHMN_10330 0.88 +0.1 1,936,692 - -0.1 1,936,692 - +0.2 1,936,694 + -0.1 1,936,695 - +1.4 1,936,724 - +0.1 1,936,724 - -0.2 1,936,727 + -0.2 1,936,727 + -1.2 1,936,728 - +0.2 1,936,737 - -1.5 1,936,805 + +0.3 1,936,805 + +0.9 1,936,805 + +1.9 1,936,805 + +0.5 1,936,806 - +0.1 1,936,806 - -0.3 1,936,817 - -0.1 1,936,958 + thpR OKFHMN_10335 0.22 -1.2 1,937,213 + thpR OKFHMN_10335 0.70 -1.1 1,937,214 - thpR OKFHMN_10335 0.71 +0.4 1,937,214 - thpR OKFHMN_10335 0.71 +0.5 1,937,216 + thpR OKFHMN_10335 0.71 -1.3 1,937,216 + thpR OKFHMN_10335 0.71 +0.2 1,937,216 + thpR OKFHMN_10335 0.71 +0.1 1,937,217 - thpR OKFHMN_10335 0.71 -1.7 1,937,221 + thpR OKFHMN_10335 0.72 -0.6 1,937,277 + thpR OKFHMN_10335 0.82 -0.2 1,937,278 - thpR OKFHMN_10335 0.83 -0.1 1,937,335 - +0.9 1,937,367 + +0.9 1,937,418 + -1.0 1,937,694 - sfsA OKFHMN_10340 0.44 +1.3 1,937,695 + sfsA OKFHMN_10340 0.44 -0.3 1,937,695 + sfsA OKFHMN_10340 0.44 +0.2 1,937,695 + sfsA OKFHMN_10340 0.44 +0.0 1,937,696 - sfsA OKFHMN_10340 0.44 +0.9 1,937,696 - sfsA OKFHMN_10340 0.44 +0.5 1,937,696 - sfsA OKFHMN_10340 0.44 +0.8 1,937,750 - sfsA OKFHMN_10340 0.52 +0.9 1,937,781 - sfsA OKFHMN_10340 0.56 -1.0 1,937,825 + sfsA OKFHMN_10340 0.63 +0.9 1,937,938 + sfsA OKFHMN_10340 0.79 -0.6 1,937,985 + sfsA OKFHMN_10340 0.85 -0.0 1,937,985 + sfsA OKFHMN_10340 0.85 +0.4 1,937,986 - sfsA OKFHMN_10340 0.85 -0.7 1,938,086 + -0.2 1,938,086 + -0.2 1,938,086 + +1.3 1,938,087 - -1.3 1,938,087 - -0.6 1,938,087 - +1.4 1,938,087 - -0.2 1,938,089 + -0.0 1,938,094 + -0.1 1,938,095 - -0.9 1,938,099 - -0.2 1,938,111 + -0.9 1,938,112 - +1.4 1,938,112 - -0.3 1,938,112 - -0.2 1,938,135 - -0.2 1,938,164 + -0.8 1,938,164 + -1.8 1,938,201 - -0.1 1,938,204 + -5.1 1,938,204 + -0.0 1,938,204 + +1.9 1,938,205 - +0.9 1,938,205 - -1.9 1,938,286 + -2.5 1,938,305 - +1.9 1,938,356 + dksA OKFHMN_10345 0.20 -3.0 1,938,357 - dksA OKFHMN_10345 0.20 -1.1 1,938,358 + dksA OKFHMN_10345 0.20 -1.1 1,938,358 + dksA OKFHMN_10345 0.20 -2.3
Or see this region's nucleotide sequence