Strain Fitness in Escherichia coli ECRC100 around OKFHMN_09955

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKFHMN_09940 and OKFHMN_09945 are separated by 2 nucleotidesOKFHMN_09945 and OKFHMN_09950 overlap by 4 nucleotidesOKFHMN_09950 and OKFHMN_09955 are separated by 184 nucleotidesOKFHMN_09955 and Asp_trna are separated by 328 nucleotidesAsp_trna and dnaQ are separated by 132 nucleotides OKFHMN_09940: OKFHMN_09940 - Peptidoglycan-binding protein LysM, at 1,859,980 to 1,860,576 _09940 OKFHMN_09945: OKFHMN_09945 - hypothetical protein, at 1,860,579 to 1,861,028 _09945 OKFHMN_09950: OKFHMN_09950 - hypothetical protein, at 1,861,025 to 1,861,321 _09950 OKFHMN_09955: OKFHMN_09955 - Uncharacterized lipoprotein YafT, at 1,861,506 to 1,862,306 _09955 OKFHMN_09960: Asp_trna - tRNA-Asp(gtc), at 1,862,635 to 1,862,711 _trna OKFHMN_09965: dnaQ - DNA polymerase III subunit epsilon, at 1,862,844 to 1,863,584 dnaQ Position (kb) 1861 1862 1863Strain fitness (log2 ratio) -1 0 1at 1860.663 kb on - strand, within OKFHMN_09945at 1860.842 kb on + strand, within OKFHMN_09945at 1860.928 kb on + strand, within OKFHMN_09945at 1861.774 kb on - strand, within OKFHMN_09955at 1861.799 kb on - strand, within OKFHMN_09955at 1862.152 kb on - strand, within OKFHMN_09955at 1862.526 kb on + strandat 1862.841 kb on + strandat 1862.846 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
1,860,663 - OKFHMN_09945 0.19 +0.6
1,860,842 + OKFHMN_09945 0.58 +0.4
1,860,928 + OKFHMN_09945 0.78 -1.4
1,861,774 - OKFHMN_09955 0.33 -0.1
1,861,799 - OKFHMN_09955 0.37 +0.2
1,862,152 - OKFHMN_09955 0.81 +1.5
1,862,526 + -0.2
1,862,841 + -0.0
1,862,846 - +0.2

Or see this region's nucleotide sequence