Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_09610 and ymfM are separated by 9 nucleotides ymfM and ymfL overlap by 4 nucleotides ymfL and OKFHMN_09625 overlap by 8 nucleotides OKFHMN_09625 and OKFHMN_09630 are separated by 97 nucleotides
OKFHMN_09610: OKFHMN_09610 - helix-turn-helix domain-containing protein, at 1,793,849 to 1,794,790
_09610
OKFHMN_09615: ymfM - Uncharacterized protein YmfM, at 1,794,800 to 1,795,138
ymfM
OKFHMN_09620: ymfL - Uncharacterized protein YmfL, at 1,795,135 to 1,795,686
ymfL
OKFHMN_09625: OKFHMN_09625 - XRE family transcriptional regulator, at 1,795,679 to 1,795,939
_09625
OKFHMN_09630: OKFHMN_09630 - transcriptional regulator, at 1,796,037 to 1,796,729
_09630
Position (kb) 1795
1796 Strain fitness (log2 ratio) -1
0
1 at 1794.368 kb on + strand, within OKFHMN_09610 at 1794.575 kb on - strand, within OKFHMN_09610 at 1794.691 kb on + strand, within OKFHMN_09610 at 1794.715 kb on + strand at 1794.768 kb on + strand at 1794.768 kb on + strand at 1794.768 kb on + strand at 1794.768 kb on + strand at 1794.769 kb on - strand at 1794.769 kb on - strand at 1794.781 kb on + strand at 1794.801 kb on + strand at 1794.801 kb on + strand at 1795.019 kb on + strand, within ymfM at 1795.053 kb on + strand, within ymfM at 1795.059 kb on + strand, within ymfM at 1795.127 kb on + strand at 1795.203 kb on + strand, within ymfL at 1795.555 kb on + strand, within ymfL at 1795.555 kb on + strand, within ymfL at 1795.570 kb on + strand, within ymfL
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,794,368 + OKFHMN_09610 0.55 +0.0 1,794,575 - OKFHMN_09610 0.77 -0.5 1,794,691 + OKFHMN_09610 0.89 +0.1 1,794,715 + -0.5 1,794,768 + +0.3 1,794,768 + +1.0 1,794,768 + -1.3 1,794,768 + -1.0 1,794,769 - +1.0 1,794,769 - -1.1 1,794,781 + +0.5 1,794,801 + +0.5 1,794,801 + -0.3 1,795,019 + ymfM OKFHMN_09615 0.65 +0.3 1,795,053 + ymfM OKFHMN_09615 0.75 -0.4 1,795,059 + ymfM OKFHMN_09615 0.76 +0.9 1,795,127 + +0.8 1,795,203 + ymfL OKFHMN_09620 0.12 -0.1 1,795,555 + ymfL OKFHMN_09620 0.76 +1.1 1,795,555 + ymfL OKFHMN_09620 0.76 +0.1 1,795,570 + ymfL OKFHMN_09620 0.79 +0.1
Or see this region's nucleotide sequence