Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_06620 and OKFHMN_06625 overlap by 4 nucleotides OKFHMN_06625 and OKFHMN_06630 overlap by 4 nucleotides OKFHMN_06630 and OKFHMN_06635 are separated by 530 nucleotides OKFHMN_06635 and OKFHMN_06640 are separated by 242 nucleotides OKFHMN_06640 and int are separated by 531 nucleotides
OKFHMN_06615: OKFHMN_06615 - cruciferin, at 1,178,595 to 1,178,777
_06615
OKFHMN_06620: OKFHMN_06620 - DUF1382 domain-containing protein, at 1,178,750 to 1,178,941
_06620
OKFHMN_06625: OKFHMN_06625 - DUF1382 domain-containing protein, at 1,178,938 to 1,179,021
_06625
OKFHMN_06630: OKFHMN_06630 - Cell division protein ZapA, at 1,179,018 to 1,179,233
_06630
OKFHMN_06635: OKFHMN_06635 - hypothetical protein, at 1,179,764 to 1,180,366
_06635
OKFHMN_06640: OKFHMN_06640 - hypothetical protein, at 1,180,609 to 1,180,776
_06640
OKFHMN_06645: int - Integrase, at 1,181,308 to 1,182,078
int
Position (kb)
1179
1180
1181 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1178.776 kb on - strand at 1179.418 kb on + strand at 1179.420 kb on + strand at 1179.457 kb on - strand at 1179.761 kb on - strand at 1179.950 kb on - strand, within OKFHMN_06635 at 1180.100 kb on + strand, within OKFHMN_06635 at 1180.164 kb on + strand, within OKFHMN_06635 at 1180.460 kb on - strand at 1180.500 kb on - strand at 1180.520 kb on + strand at 1180.606 kb on + strand at 1180.606 kb on + strand at 1180.730 kb on + strand, within OKFHMN_06640 at 1180.798 kb on - strand at 1180.798 kb on - strand at 1180.819 kb on + strand at 1180.819 kb on + strand at 1180.936 kb on + strand at 1180.936 kb on + strand at 1181.060 kb on + strand at 1181.060 kb on + strand at 1181.062 kb on + strand at 1181.062 kb on + strand at 1181.064 kb on + strand at 1181.064 kb on + strand at 1181.065 kb on - strand at 1181.075 kb on - strand at 1181.078 kb on - strand at 1181.083 kb on + strand at 1181.084 kb on - strand at 1181.229 kb on + strand at 1181.230 kb on - strand at 1181.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,178,776 - +0.7 1,179,418 + +0.5 1,179,420 + +0.7 1,179,457 - +0.2 1,179,761 - -2.3 1,179,950 - OKFHMN_06635 0.31 -0.4 1,180,100 + OKFHMN_06635 0.56 +1.6 1,180,164 + OKFHMN_06635 0.66 +0.3 1,180,460 - +1.5 1,180,500 - +0.9 1,180,520 + +1.9 1,180,606 + -0.5 1,180,606 + +0.2 1,180,730 + OKFHMN_06640 0.72 -0.2 1,180,798 - +1.0 1,180,798 - -0.7 1,180,819 + -1.2 1,180,819 + -0.2 1,180,936 + +1.6 1,180,936 + +1.1 1,181,060 + +0.2 1,181,060 + +0.3 1,181,062 + +0.6 1,181,062 + -0.5 1,181,064 + -1.3 1,181,064 + +0.9 1,181,065 - -1.5 1,181,075 - +3.2 1,181,078 - -0.4 1,181,083 + -0.2 1,181,084 - +1.5 1,181,229 + +0.3 1,181,230 - +0.3 1,181,320 - -0.7
Or see this region's nucleotide sequence