Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05670

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_05665 and cah are separated by 110 nucleotidescah and OKFHMN_05675 are separated by 372 nucleotides OKFHMN_05665: OKFHMN_05665 - dGTPase, at 966,425 to 968,809 _05665 OKFHMN_05670: cah - calcium-binding autotransporter Cah, at 968,920 to 971,769 cah OKFHMN_05675: OKFHMN_05675 - 50S ribosome-binding GTPase, at 972,142 to 973,014 _05675 Position (kb) 968 969 970 971 972Strain fitness (log2 ratio) -2 -1 0 1at 968.699 kb on - strandat 968.917 kb on + strandat 969.015 kb on + strandat 969.093 kb on + strandat 969.369 kb on - strand, within cahat 969.555 kb on + strand, within cahat 969.556 kb on - strand, within cahat 969.650 kb on + strand, within cahat 969.652 kb on + strand, within cahat 969.652 kb on + strand, within cahat 969.673 kb on - strand, within cahat 969.673 kb on - strand, within cahat 969.829 kb on + strand, within cahat 969.829 kb on + strand, within cahat 969.830 kb on - strand, within cahat 969.872 kb on + strand, within cahat 969.873 kb on - strand, within cahat 970.200 kb on + strand, within cahat 970.267 kb on - strand, within cah

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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968,699 - +0.4
968,917 + +0.7
969,015 + +1.6
969,093 + +0.7
969,369 - cah OKFHMN_05670 0.16 -1.9
969,555 + cah OKFHMN_05670 0.22 +1.1
969,556 - cah OKFHMN_05670 0.22 -0.6
969,650 + cah OKFHMN_05670 0.26 +1.6
969,652 + cah OKFHMN_05670 0.26 +1.2
969,652 + cah OKFHMN_05670 0.26 +0.6
969,673 - cah OKFHMN_05670 0.26 +0.5
969,673 - cah OKFHMN_05670 0.26 +1.1
969,829 + cah OKFHMN_05670 0.32 -0.7
969,829 + cah OKFHMN_05670 0.32 -1.4
969,830 - cah OKFHMN_05670 0.32 +0.7
969,872 + cah OKFHMN_05670 0.33 -0.2
969,873 - cah OKFHMN_05670 0.33 +1.7
970,200 + cah OKFHMN_05670 0.45 -0.2
970,267 - cah OKFHMN_05670 0.47 -1.7

Or see this region's nucleotide sequence