Strain Fitness in Escherichia coli ECRC100 around OKFHMN_02705

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespM1 and nleG are separated by 183 nucleotidesnleG and OKFHMN_02710 are separated by 754 nucleotides OKFHMN_02700: espM1 - T3SS effector guanine nucleotide exchange factor EspM1, at 432,648 to 433,238 espM1 OKFHMN_02705: nleG - T3SS effector E3 ubiquitin-protein ligase NleG, at 433,422 to 434,069 nleG OKFHMN_02710: OKFHMN_02710 - hypothetical protein, at 434,824 to 435,093 _02710 Position (kb) 433 434 435Strain fitness (log2 ratio) -1 0 1at 432.468 kb on - strandat 432.524 kb on - strandat 432.564 kb on - strandat 432.589 kb on + strandat 432.634 kb on - strandat 432.850 kb on - strand, within espM1at 432.879 kb on - strand, within espM1at 433.009 kb on - strand, within espM1at 433.009 kb on - strand, within espM1at 433.231 kb on - strandat 433.314 kb on + strandat 433.900 kb on + strand, within nleGat 435.061 kb on - strand, within OKFHMN_02710

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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432,468 - -0.1
432,524 - -1.1
432,564 - -1.2
432,589 + +0.5
432,634 - +0.8
432,850 - espM1 OKFHMN_02700 0.34 -0.1
432,879 - espM1 OKFHMN_02700 0.39 -0.7
433,009 - espM1 OKFHMN_02700 0.61 +0.3
433,009 - espM1 OKFHMN_02700 0.61 +0.1
433,231 - +0.6
433,314 + +0.4
433,900 + nleG OKFHMN_02705 0.74 +0.1
435,061 - OKFHMN_02710 0.88 +1.1

Or see this region's nucleotide sequence