Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01745

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynbD and ynbC overlap by 11 nucleotidesynbC and ynbB are separated by 15 nucleotidesynbB and ynbA overlap by 1 nucleotides OKFHMN_01740: ynbD - Uncharacterized protein YnbD, at 253,032 to 254,348 ynbD OKFHMN_01745: ynbC - Uncharacterized protein YnbC, at 254,338 to 256,095 ynbC OKFHMN_01750: ynbB - Uncharacterized protein YnbB, at 256,111 to 257,007 ynbB OKFHMN_01755: ynbA - Inner membrane protein YnbA, at 257,007 to 257,612 ynbA Position (kb) 254 255 256 257Strain fitness (log2 ratio) -1 0 1 2at 253.383 kb on - strand, within ynbDat 253.406 kb on - strand, within ynbDat 253.682 kb on - strand, within ynbDat 253.771 kb on - strand, within ynbDat 253.923 kb on - strand, within ynbDat 253.944 kb on - strand, within ynbDat 254.627 kb on + strand, within ynbCat 254.653 kb on - strand, within ynbCat 255.117 kb on + strand, within ynbCat 255.251 kb on - strand, within ynbCat 255.361 kb on + strand, within ynbCat 255.943 kb on - strandat 256.285 kb on + strand, within ynbB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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253,383 - ynbD OKFHMN_01740 0.27 +0.0
253,406 - ynbD OKFHMN_01740 0.28 +1.9
253,682 - ynbD OKFHMN_01740 0.49 +0.5
253,771 - ynbD OKFHMN_01740 0.56 +0.1
253,923 - ynbD OKFHMN_01740 0.68 +1.4
253,944 - ynbD OKFHMN_01740 0.69 +0.2
254,627 + ynbC OKFHMN_01745 0.16 -1.5
254,653 - ynbC OKFHMN_01745 0.18 -0.7
255,117 + ynbC OKFHMN_01745 0.44 +0.1
255,251 - ynbC OKFHMN_01745 0.52 +1.5
255,361 + ynbC OKFHMN_01745 0.58 +0.8
255,943 - +0.8
256,285 + ynbB OKFHMN_01750 0.19 +0.9

Or see this region's nucleotide sequence