Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01305

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosC and dosP are separated by 24 nucleotidesdosP and dosP overlap by 4 nucleotides OKFHMN_01300: dosC - diguanylate cyclase DosC, at 162,684 to 164,066 dosC OKFHMN_01305: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 164,091 to 165,332 dosP OKFHMN_01310: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 165,329 to 166,480 dosP Position (kb) 164 165 166Strain fitness (log2 ratio) -1 0 1at 163.194 kb on - strand, within dosCat 163.301 kb on - strand, within dosCat 163.318 kb on + strand, within dosCat 163.710 kb on - strand, within dosCat 164.086 kb on + strandat 165.632 kb on + strand, within dosPat 165.633 kb on - strand, within dosPat 166.206 kb on + strand, within dosP

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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163,194 - dosC OKFHMN_01300 0.37 +0.2
163,301 - dosC OKFHMN_01300 0.45 -0.6
163,318 + dosC OKFHMN_01300 0.46 +0.9
163,710 - dosC OKFHMN_01300 0.74 -0.3
164,086 + -0.2
165,632 + dosP OKFHMN_01310 0.26 +1.2
165,633 - dosP OKFHMN_01310 0.26 +0.4
166,206 + dosP OKFHMN_01310 0.76 -0.1

Or see this region's nucleotide sequence