Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01280

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddB and pqqL are separated by 56 nucleotidespqqL and gadB are separated by 360 nucleotides OKFHMN_01275: yddB - Uncharacterized protein YddB, at 152,193 to 154,565 yddB OKFHMN_01280: pqqL - putative zinc protease PqqL, at 154,622 to 157,405 pqqL OKFHMN_01285: gadB - glutamate decarboxylase, at 157,766 to 159,166 gadB Position (kb) 154 155 156 157 158Strain fitness (log2 ratio) -2 -1 0 1at 153.827 kb on + strand, within yddBat 154.049 kb on - strand, within yddBat 154.052 kb on + strand, within yddBat 154.078 kb on - strand, within yddBat 154.080 kb on - strand, within yddBat 154.153 kb on - strand, within yddBat 154.350 kb on + strandat 154.359 kb on + strandat 154.360 kb on - strandat 154.748 kb on - strandat 154.748 kb on - strandat 154.964 kb on + strand, within pqqLat 155.279 kb on - strand, within pqqLat 155.825 kb on - strand, within pqqLat 156.421 kb on + strand, within pqqLat 156.769 kb on + strand, within pqqLat 156.862 kb on - strand, within pqqL

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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153,827 + yddB OKFHMN_01275 0.69 +1.1
154,049 - yddB OKFHMN_01275 0.78 +0.2
154,052 + yddB OKFHMN_01275 0.78 -0.3
154,078 - yddB OKFHMN_01275 0.79 +0.4
154,080 - yddB OKFHMN_01275 0.80 +0.6
154,153 - yddB OKFHMN_01275 0.83 -0.0
154,350 + +0.9
154,359 + +1.4
154,360 - -0.5
154,748 - -1.4
154,748 - +0.2
154,964 + pqqL OKFHMN_01280 0.12 -0.9
155,279 - pqqL OKFHMN_01280 0.24 +1.2
155,825 - pqqL OKFHMN_01280 0.43 -1.6
156,421 + pqqL OKFHMN_01280 0.65 -2.4
156,769 + pqqL OKFHMN_01280 0.77 +0.3
156,862 - pqqL OKFHMN_01280 0.80 +0.4

Or see this region's nucleotide sequence