Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00660

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_00645 and OKFHMN_00650 overlap by 8 nucleotidesOKFHMN_00650 and OKFHMN_00655 overlap by 11 nucleotidesOKFHMN_00655 and OKFHMN_00660 overlap by 8 nucleotidesOKFHMN_00660 and OKFHMN_00665 are separated by 5 nucleotidesOKFHMN_00665 and OKFHMN_00670 overlap by 4 nucleotides OKFHMN_00645: OKFHMN_00645 - host cell division inhibitor Icd-like protein, at 37,295 to 38,239 _00645 OKFHMN_00650: OKFHMN_00650 - hypothetical protein, at 38,232 to 38,444 _00650 OKFHMN_00655: OKFHMN_00655 - Putative prophage protein, at 38,434 to 38,898 _00655 OKFHMN_00660: OKFHMN_00660 - hypothetical protein, at 38,891 to 39,124 _00660 OKFHMN_00665: OKFHMN_00665 - DUF4222 domain-containing protein, at 39,130 to 39,429 _00665 OKFHMN_00670: OKFHMN_00670 - DNA primase, at 39,426 to 40,826 _00670 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1at 37.956 kb on + strand, within OKFHMN_00645at 38.004 kb on - strand, within OKFHMN_00645at 38.042 kb on - strand, within OKFHMN_00645at 38.061 kb on + strand, within OKFHMN_00645at 38.062 kb on - strand, within OKFHMN_00645at 39.280 kb on + strand, within OKFHMN_00665at 39.677 kb on + strand, within OKFHMN_00670at 39.925 kb on + strand, within OKFHMN_00670at 39.925 kb on + strand, within OKFHMN_00670at 39.926 kb on - strand, within OKFHMN_00670at 39.927 kb on + strand, within OKFHMN_00670at 40.120 kb on - strand, within OKFHMN_00670

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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37,956 + OKFHMN_00645 0.70 +0.2
38,004 - OKFHMN_00645 0.75 -0.4
38,042 - OKFHMN_00645 0.79 +0.2
38,061 + OKFHMN_00645 0.81 +1.4
38,062 - OKFHMN_00645 0.81 -0.6
39,280 + OKFHMN_00665 0.50 -0.1
39,677 + OKFHMN_00670 0.18 +1.3
39,925 + OKFHMN_00670 0.36 -0.3
39,925 + OKFHMN_00670 0.36 +0.6
39,926 - OKFHMN_00670 0.36 -0.4
39,927 + OKFHMN_00670 0.36 -0.2
40,120 - OKFHMN_00670 0.50 +1.2

Or see this region's nucleotide sequence