Strain Fitness in Erwinia amylovora T8 around OLJFJH_09705

Experiment: FE-G1T (Control flower group 1, top)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09700 and OLJFJH_09705 are separated by 6 nucleotidesOLJFJH_09705 and OLJFJH_09710 are separated by 429 nucleotides OLJFJH_09700: OLJFJH_09700 - 3-deoxy-7-phosphoheptulonate synthase, at 1,999,446 to 2,000,525 _09700 OLJFJH_09705: OLJFJH_09705 - bifunctional chorismate mutase/prephenate dehydrogenase, at 2,000,532 to 2,001,653 _09705 OLJFJH_09710: OLJFJH_09710 - bifunctional chorismate mutase/prephenate dehydratase, at 2,002,083 to 2,003,243 _09710 Position (kb) 2000 2001 2002Strain fitness (log2 ratio) -1 0 1at 2001.651 kb on + strandat 2001.773 kb on + strandat 2001.773 kb on + strandat 2001.854 kb on - strandat 2001.855 kb on + strandat 2001.856 kb on - strandat 2001.856 kb on - strandat 2001.883 kb on - strandat 2002.041 kb on - strandat 2002.107 kb on - strandat 2002.216 kb on + strand, within OLJFJH_09710at 2002.217 kb on - strand, within OLJFJH_09710at 2002.217 kb on - strand, within OLJFJH_09710at 2002.450 kb on - strand, within OLJFJH_09710at 2002.463 kb on - strand, within OLJFJH_09710

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-G1T (Control flower group 1, top)
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2,001,651 + -0.6
2,001,773 + -1.0
2,001,773 + +0.4
2,001,854 - -0.7
2,001,855 + +0.9
2,001,856 - +0.1
2,001,856 - -0.1
2,001,883 - -0.5
2,002,041 - +0.0
2,002,107 - +1.6
2,002,216 + OLJFJH_09710 0.11 -0.2
2,002,217 - OLJFJH_09710 0.12 +0.1
2,002,217 - OLJFJH_09710 0.12 -0.3
2,002,450 - OLJFJH_09710 0.32 +0.7
2,002,463 - OLJFJH_09710 0.33 -0.0

Or see this region's nucleotide sequence