Strain Fitness in Erwinia amylovora T8 around OLJFJH_03310

Experiment: FE-G1T (Control flower group 1, top)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_03305 and OLJFJH_03310 are separated by 127 nucleotidesOLJFJH_03310 and OLJFJH_03315 are separated by 22 nucleotidesOLJFJH_03315 and OLJFJH_03320 are separated by 168 nucleotides OLJFJH_03305: OLJFJH_03305 - peptide antibiotic transporter SbmA, at 625,216 to 626,460 _03305 OLJFJH_03310: OLJFJH_03310 - RuBisCO-small domain-containing protein, at 626,588 to 626,818 _03310 OLJFJH_03315: OLJFJH_03315 - DNA-binding protein, at 626,841 to 627,380 _03315 OLJFJH_03320: OLJFJH_03320 - hypothetical protein, at 627,549 to 632,342 _03320 Position (kb) 626 627Strain fitness (log2 ratio) -2 -1 0 1at 625.605 kb on + strand, within OLJFJH_03305at 625.608 kb on + strand, within OLJFJH_03305at 625.609 kb on - strand, within OLJFJH_03305at 625.712 kb on - strand, within OLJFJH_03305at 625.712 kb on - strand, within OLJFJH_03305at 625.712 kb on - strand, within OLJFJH_03305at 625.715 kb on + strand, within OLJFJH_03305at 625.715 kb on + strand, within OLJFJH_03305at 625.715 kb on + strand, within OLJFJH_03305at 625.715 kb on + strand, within OLJFJH_03305at 625.716 kb on - strand, within OLJFJH_03305at 625.747 kb on + strand, within OLJFJH_03305at 625.747 kb on + strand, within OLJFJH_03305at 625.747 kb on + strand, within OLJFJH_03305at 625.747 kb on + strand, within OLJFJH_03305at 625.747 kb on + strand, within OLJFJH_03305at 625.747 kb on + strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.748 kb on - strand, within OLJFJH_03305at 625.855 kb on - strand, within OLJFJH_03305at 625.866 kb on + strand, within OLJFJH_03305at 625.867 kb on - strand, within OLJFJH_03305at 625.949 kb on - strand, within OLJFJH_03305at 625.949 kb on - strand, within OLJFJH_03305at 625.949 kb on - strand, within OLJFJH_03305at 625.973 kb on + strand, within OLJFJH_03305at 625.974 kb on - strand, within OLJFJH_03305at 625.974 kb on - strand, within OLJFJH_03305at 626.040 kb on + strand, within OLJFJH_03305at 626.153 kb on - strand, within OLJFJH_03305at 626.374 kb on + strandat 626.611 kb on + strand, within OLJFJH_03310at 626.612 kb on - strand, within OLJFJH_03310at 626.612 kb on - strand, within OLJFJH_03310at 626.625 kb on + strand, within OLJFJH_03310at 626.631 kb on - strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.691 kb on + strand, within OLJFJH_03310at 626.692 kb on - strand, within OLJFJH_03310at 626.692 kb on - strand, within OLJFJH_03310at 626.692 kb on - strand, within OLJFJH_03310at 626.692 kb on - strand, within OLJFJH_03310at 626.692 kb on - strand, within OLJFJH_03310at 626.692 kb on - strand, within OLJFJH_03310at 626.692 kb on - strand, within OLJFJH_03310at 626.779 kb on + strand, within OLJFJH_03310at 626.840 kb on + strandat 626.840 kb on + strandat 626.950 kb on - strand, within OLJFJH_03315at 626.965 kb on - strand, within OLJFJH_03315at 627.064 kb on + strand, within OLJFJH_03315at 627.064 kb on + strand, within OLJFJH_03315at 627.137 kb on - strand, within OLJFJH_03315at 627.137 kb on - strand, within OLJFJH_03315at 627.185 kb on + strand, within OLJFJH_03315at 627.185 kb on + strand, within OLJFJH_03315at 627.186 kb on - strand, within OLJFJH_03315at 627.253 kb on + strand, within OLJFJH_03315at 627.421 kb on + strandat 627.427 kb on - strandat 627.427 kb on - strandat 627.447 kb on - strandat 627.485 kb on + strandat 627.508 kb on + strandat 627.508 kb on + strandat 627.651 kb on + strandat 627.651 kb on + strandat 627.789 kb on - strandat 627.799 kb on + strandat 627.799 kb on + strandat 627.816 kb on - strandat 627.816 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction FE-G1T (Control flower group 1, top)
remove
625,605 + OLJFJH_03305 0.31 +0.6
625,608 + OLJFJH_03305 0.31 -0.9
625,609 - OLJFJH_03305 0.32 -0.1
625,712 - OLJFJH_03305 0.40 +0.8
625,712 - OLJFJH_03305 0.40 -0.2
625,712 - OLJFJH_03305 0.40 -0.0
625,715 + OLJFJH_03305 0.40 +0.4
625,715 + OLJFJH_03305 0.40 -0.3
625,715 + OLJFJH_03305 0.40 -0.4
625,715 + OLJFJH_03305 0.40 +0.2
625,716 - OLJFJH_03305 0.40 -0.6
625,747 + OLJFJH_03305 0.43 +0.2
625,747 + OLJFJH_03305 0.43 -0.2
625,747 + OLJFJH_03305 0.43 +0.4
625,747 + OLJFJH_03305 0.43 -0.8
625,747 + OLJFJH_03305 0.43 -0.2
625,747 + OLJFJH_03305 0.43 +0.0
625,748 - OLJFJH_03305 0.43 -0.2
625,748 - OLJFJH_03305 0.43 -0.6
625,748 - OLJFJH_03305 0.43 +0.4
625,748 - OLJFJH_03305 0.43 -0.0
625,748 - OLJFJH_03305 0.43 -0.4
625,748 - OLJFJH_03305 0.43 -0.1
625,748 - OLJFJH_03305 0.43 -0.2
625,748 - OLJFJH_03305 0.43 -0.6
625,855 - OLJFJH_03305 0.51 -1.2
625,866 + OLJFJH_03305 0.52 +0.5
625,867 - OLJFJH_03305 0.52 -0.2
625,949 - OLJFJH_03305 0.59 -0.7
625,949 - OLJFJH_03305 0.59 -0.3
625,949 - OLJFJH_03305 0.59 -0.7
625,973 + OLJFJH_03305 0.61 -1.1
625,974 - OLJFJH_03305 0.61 -0.2
625,974 - OLJFJH_03305 0.61 +0.5
626,040 + OLJFJH_03305 0.66 -0.8
626,153 - OLJFJH_03305 0.75 -1.7
626,374 + -0.1
626,611 + OLJFJH_03310 0.10 +0.1
626,612 - OLJFJH_03310 0.10 -0.2
626,612 - OLJFJH_03310 0.10 -0.4
626,625 + OLJFJH_03310 0.16 +0.7
626,631 - OLJFJH_03310 0.19 +0.1
626,691 + OLJFJH_03310 0.45 +1.6
626,691 + OLJFJH_03310 0.45 -0.8
626,691 + OLJFJH_03310 0.45 +0.7
626,691 + OLJFJH_03310 0.45 -0.1
626,691 + OLJFJH_03310 0.45 -0.5
626,691 + OLJFJH_03310 0.45 -0.3
626,691 + OLJFJH_03310 0.45 -0.2
626,691 + OLJFJH_03310 0.45 -0.1
626,692 - OLJFJH_03310 0.45 -0.3
626,692 - OLJFJH_03310 0.45 -0.2
626,692 - OLJFJH_03310 0.45 -0.1
626,692 - OLJFJH_03310 0.45 -0.6
626,692 - OLJFJH_03310 0.45 +0.3
626,692 - OLJFJH_03310 0.45 -0.3
626,692 - OLJFJH_03310 0.45 -0.8
626,779 + OLJFJH_03310 0.83 -1.5
626,840 + +0.4
626,840 + -0.6
626,950 - OLJFJH_03315 0.20 +0.2
626,965 - OLJFJH_03315 0.23 -1.2
627,064 + OLJFJH_03315 0.41 -0.5
627,064 + OLJFJH_03315 0.41 -0.1
627,137 - OLJFJH_03315 0.55 -0.6
627,137 - OLJFJH_03315 0.55 +0.9
627,185 + OLJFJH_03315 0.64 -0.3
627,185 + OLJFJH_03315 0.64 -0.4
627,186 - OLJFJH_03315 0.64 -0.4
627,253 + OLJFJH_03315 0.76 -1.9
627,421 + +0.9
627,427 - -0.4
627,427 - -1.0
627,447 - +0.1
627,485 + +0.1
627,508 + +0.3
627,508 + -0.2
627,651 + +0.9
627,651 + -0.3
627,789 - +1.2
627,799 + -0.1
627,799 + +0.3
627,816 - +0.1
627,816 - -0.0

Or see this region's nucleotide sequence