Strain Fitness in Erwinia amylovora T8 around OLJFJH_03280

Experiment: FE-G1T (Control flower group 1, top)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03275 and OLJFJH_03280 are separated by 132 nucleotidesOLJFJH_03280 and OLJFJH_03285 are separated by 620 nucleotides OLJFJH_03275: OLJFJH_03275 - hypothetical protein, at 615,882 to 616,334 _03275 OLJFJH_03280: OLJFJH_03280 - acyltransferase, at 616,467 to 617,582 _03280 OLJFJH_03285: OLJFJH_03285 - alcohol dehydrogenase, at 618,203 to 619,519 _03285 Position (kb) 616 617 618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 615.487 kb on + strandat 615.488 kb on - strandat 615.488 kb on - strandat 615.501 kb on - strandat 615.501 kb on - strandat 615.585 kb on - strandat 615.585 kb on - strandat 615.636 kb on + strandat 615.640 kb on + strandat 615.660 kb on + strandat 615.660 kb on + strandat 615.660 kb on + strandat 615.661 kb on - strandat 615.663 kb on - strandat 615.680 kb on - strandat 615.824 kb on + strandat 615.842 kb on + strandat 615.882 kb on - strandat 615.906 kb on - strandat 615.930 kb on + strand, within OLJFJH_03275at 615.930 kb on + strand, within OLJFJH_03275at 615.932 kb on + strand, within OLJFJH_03275at 615.978 kb on - strand, within OLJFJH_03275at 616.029 kb on - strand, within OLJFJH_03275at 616.066 kb on + strand, within OLJFJH_03275at 616.067 kb on - strand, within OLJFJH_03275at 616.067 kb on - strand, within OLJFJH_03275at 616.175 kb on - strand, within OLJFJH_03275at 616.197 kb on + strand, within OLJFJH_03275at 616.198 kb on - strand, within OLJFJH_03275at 616.198 kb on - strand, within OLJFJH_03275at 616.255 kb on + strand, within OLJFJH_03275at 616.255 kb on + strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.256 kb on - strand, within OLJFJH_03275at 616.273 kb on + strand, within OLJFJH_03275at 616.305 kb on + strandat 616.305 kb on + strandat 616.305 kb on + strandat 616.305 kb on + strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.306 kb on - strandat 616.308 kb on - strandat 616.309 kb on + strandat 616.309 kb on + strandat 616.309 kb on + strandat 616.310 kb on - strandat 616.310 kb on - strandat 616.310 kb on - strandat 616.310 kb on - strandat 616.421 kb on - strandat 616.421 kb on - strandat 616.572 kb on + strandat 616.990 kb on - strand, within OLJFJH_03280at 617.078 kb on + strand, within OLJFJH_03280at 617.102 kb on + strand, within OLJFJH_03280at 617.147 kb on - strand, within OLJFJH_03280at 617.161 kb on - strand, within OLJFJH_03280at 617.274 kb on + strand, within OLJFJH_03280at 617.274 kb on + strand, within OLJFJH_03280at 617.274 kb on + strand, within OLJFJH_03280at 617.275 kb on - strand, within OLJFJH_03280at 617.296 kb on - strand, within OLJFJH_03280at 617.340 kb on + strand, within OLJFJH_03280at 617.392 kb on + strand, within OLJFJH_03280at 617.514 kb on + strandat 617.629 kb on + strandat 617.910 kb on - strandat 617.986 kb on + strandat 618.038 kb on + strandat 618.040 kb on + strandat 618.040 kb on + strandat 618.042 kb on + strandat 618.204 kb on + strandat 618.310 kb on + strandat 618.437 kb on + strand, within OLJFJH_03285at 618.437 kb on + strand, within OLJFJH_03285at 618.437 kb on + strand, within OLJFJH_03285at 618.438 kb on - strand, within OLJFJH_03285at 618.442 kb on + strand, within OLJFJH_03285at 618.558 kb on + strand, within OLJFJH_03285at 618.559 kb on - strand, within OLJFJH_03285

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-G1T (Control flower group 1, top)
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615,487 + +0.4
615,488 - -0.8
615,488 - -0.1
615,501 - -0.6
615,501 - -0.3
615,585 - +0.5
615,585 - +3.4
615,636 + -0.2
615,640 + -0.1
615,660 + -0.4
615,660 + -0.2
615,660 + -0.5
615,661 - -0.2
615,663 - -0.1
615,680 - +0.1
615,824 + -0.2
615,842 + +0.2
615,882 - -0.2
615,906 - -0.1
615,930 + OLJFJH_03275 0.11 -0.3
615,930 + OLJFJH_03275 0.11 +1.9
615,932 + OLJFJH_03275 0.11 -0.2
615,978 - OLJFJH_03275 0.21 -0.2
616,029 - OLJFJH_03275 0.32 -0.1
616,066 + OLJFJH_03275 0.41 -0.1
616,067 - OLJFJH_03275 0.41 +1.5
616,067 - OLJFJH_03275 0.41 +0.3
616,175 - OLJFJH_03275 0.65 +0.0
616,197 + OLJFJH_03275 0.70 +0.1
616,198 - OLJFJH_03275 0.70 +0.1
616,198 - OLJFJH_03275 0.70 +0.2
616,255 + OLJFJH_03275 0.82 -0.4
616,255 + OLJFJH_03275 0.82 +1.5
616,256 - OLJFJH_03275 0.83 -0.0
616,256 - OLJFJH_03275 0.83 +0.1
616,256 - OLJFJH_03275 0.83 +0.6
616,256 - OLJFJH_03275 0.83 +3.2
616,273 + OLJFJH_03275 0.86 -0.7
616,305 + +0.1
616,305 + -0.3
616,305 + +0.0
616,305 + +0.7
616,306 - +0.6
616,306 - -0.4
616,306 - -0.9
616,306 - -0.3
616,306 - +0.6
616,308 - -0.5
616,309 + +2.6
616,309 + -0.3
616,309 + -2.6
616,310 - -0.9
616,310 - +0.5
616,310 - -0.1
616,310 - -0.0
616,421 - -0.5
616,421 - +0.6
616,572 + -0.0
616,990 - OLJFJH_03280 0.47 -0.4
617,078 + OLJFJH_03280 0.55 +0.9
617,102 + OLJFJH_03280 0.57 -0.0
617,147 - OLJFJH_03280 0.61 -0.3
617,161 - OLJFJH_03280 0.62 +1.7
617,274 + OLJFJH_03280 0.72 +0.2
617,274 + OLJFJH_03280 0.72 +2.7
617,274 + OLJFJH_03280 0.72 -0.6
617,275 - OLJFJH_03280 0.72 -1.3
617,296 - OLJFJH_03280 0.74 +0.2
617,340 + OLJFJH_03280 0.78 +0.4
617,392 + OLJFJH_03280 0.83 -0.3
617,514 + +0.3
617,629 + +0.1
617,910 - +0.2
617,986 + +0.2
618,038 + -0.0
618,040 + -0.8
618,040 + -0.5
618,042 + +1.7
618,204 + +0.3
618,310 + -0.3
618,437 + OLJFJH_03285 0.18 +0.1
618,437 + OLJFJH_03285 0.18 -0.1
618,437 + OLJFJH_03285 0.18 +0.1
618,438 - OLJFJH_03285 0.18 +0.5
618,442 + OLJFJH_03285 0.18 +0.2
618,558 + OLJFJH_03285 0.27 +0.3
618,559 - OLJFJH_03285 0.27 -0.5

Or see this region's nucleotide sequence