Strain Fitness in Erwinia amylovora T8 around OLJFJH_00855

Experiment: FE-G1T (Control flower group 1, top)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00845 and OLJFJH_00850 are separated by 21 nucleotidesOLJFJH_00850 and OLJFJH_00855 are separated by 87 nucleotidesOLJFJH_00855 and OLJFJH_00860 are separated by 171 nucleotides OLJFJH_00845: OLJFJH_00845 - polyamine aminopropyltransferase, at 88,321 to 89,178 _00845 OLJFJH_00850: OLJFJH_00850 - adenosylmethionine decarboxylase, at 89,200 to 90,003 _00850 OLJFJH_00855: OLJFJH_00855 - protein YacL, at 90,091 to 90,453 _00855 OLJFJH_00860: OLJFJH_00860 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 90,625 to 93,336 _00860 Position (kb) 90 91Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 89.110 kb on + strandat 89.111 kb on - strandat 89.111 kb on - strandat 89.152 kb on + strandat 89.153 kb on - strandat 89.160 kb on - strandat 89.190 kb on - strandat 89.223 kb on - strandat 89.266 kb on + strandat 89.267 kb on - strandat 89.267 kb on - strandat 89.308 kb on + strand, within OLJFJH_00850at 89.309 kb on - strand, within OLJFJH_00850at 89.309 kb on - strand, within OLJFJH_00850at 89.310 kb on + strand, within OLJFJH_00850at 89.311 kb on - strand, within OLJFJH_00850at 89.311 kb on - strand, within OLJFJH_00850at 89.311 kb on - strand, within OLJFJH_00850at 89.311 kb on - strand, within OLJFJH_00850at 89.317 kb on + strand, within OLJFJH_00850at 89.317 kb on + strand, within OLJFJH_00850at 89.332 kb on + strand, within OLJFJH_00850at 89.332 kb on + strand, within OLJFJH_00850at 89.332 kb on + strand, within OLJFJH_00850at 89.388 kb on + strand, within OLJFJH_00850at 89.389 kb on - strand, within OLJFJH_00850at 89.401 kb on - strand, within OLJFJH_00850at 89.443 kb on - strand, within OLJFJH_00850at 89.536 kb on - strand, within OLJFJH_00850at 89.544 kb on + strand, within OLJFJH_00850at 89.545 kb on - strand, within OLJFJH_00850at 89.552 kb on + strand, within OLJFJH_00850at 89.553 kb on - strand, within OLJFJH_00850at 89.556 kb on + strand, within OLJFJH_00850at 89.556 kb on + strand, within OLJFJH_00850at 89.556 kb on + strand, within OLJFJH_00850at 89.556 kb on + strand, within OLJFJH_00850at 89.556 kb on + strand, within OLJFJH_00850at 89.556 kb on + strand, within OLJFJH_00850at 89.556 kb on + strand, within OLJFJH_00850at 89.557 kb on - strand, within OLJFJH_00850at 89.557 kb on - strand, within OLJFJH_00850at 89.557 kb on - strand, within OLJFJH_00850at 89.557 kb on - strand, within OLJFJH_00850at 89.557 kb on - strand, within OLJFJH_00850at 89.557 kb on - strand, within OLJFJH_00850at 89.557 kb on - strand, within OLJFJH_00850at 89.660 kb on + strand, within OLJFJH_00850at 89.661 kb on - strand, within OLJFJH_00850at 89.791 kb on - strand, within OLJFJH_00850at 89.803 kb on + strand, within OLJFJH_00850at 89.803 kb on + strand, within OLJFJH_00850at 89.804 kb on - strand, within OLJFJH_00850at 89.804 kb on - strand, within OLJFJH_00850at 89.838 kb on + strand, within OLJFJH_00850at 89.838 kb on + strand, within OLJFJH_00850at 89.839 kb on - strand, within OLJFJH_00850at 89.839 kb on - strand, within OLJFJH_00850at 89.884 kb on + strand, within OLJFJH_00850at 89.928 kb on + strandat 90.177 kb on - strand, within OLJFJH_00855at 90.179 kb on + strand, within OLJFJH_00855at 90.180 kb on - strand, within OLJFJH_00855at 90.180 kb on - strand, within OLJFJH_00855at 90.180 kb on - strand, within OLJFJH_00855at 90.267 kb on - strand, within OLJFJH_00855at 90.308 kb on - strand, within OLJFJH_00855at 90.308 kb on - strand, within OLJFJH_00855at 90.666 kb on + strandat 90.666 kb on + strandat 90.667 kb on - strandat 90.669 kb on - strandat 90.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-G1T (Control flower group 1, top)
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89,110 + -0.3
89,111 - +0.5
89,111 - -0.8
89,152 + -0.1
89,153 - -1.1
89,160 - +3.3
89,190 - +0.4
89,223 - -0.2
89,266 + +0.3
89,267 - -1.3
89,267 - +1.1
89,308 + OLJFJH_00850 0.13 +0.7
89,309 - OLJFJH_00850 0.14 -0.4
89,309 - OLJFJH_00850 0.14 +0.9
89,310 + OLJFJH_00850 0.14 +1.0
89,311 - OLJFJH_00850 0.14 -0.3
89,311 - OLJFJH_00850 0.14 +2.9
89,311 - OLJFJH_00850 0.14 +0.6
89,311 - OLJFJH_00850 0.14 +0.2
89,317 + OLJFJH_00850 0.15 -0.3
89,317 + OLJFJH_00850 0.15 +0.3
89,332 + OLJFJH_00850 0.16 +0.0
89,332 + OLJFJH_00850 0.16 -0.0
89,332 + OLJFJH_00850 0.16 +0.4
89,388 + OLJFJH_00850 0.23 +1.1
89,389 - OLJFJH_00850 0.24 +0.3
89,401 - OLJFJH_00850 0.25 +0.7
89,443 - OLJFJH_00850 0.30 -0.5
89,536 - OLJFJH_00850 0.42 +0.8
89,544 + OLJFJH_00850 0.43 -1.0
89,545 - OLJFJH_00850 0.43 -0.1
89,552 + OLJFJH_00850 0.44 -0.4
89,553 - OLJFJH_00850 0.44 -0.3
89,556 + OLJFJH_00850 0.44 +0.2
89,556 + OLJFJH_00850 0.44 -0.4
89,556 + OLJFJH_00850 0.44 -0.5
89,556 + OLJFJH_00850 0.44 +0.0
89,556 + OLJFJH_00850 0.44 -0.1
89,556 + OLJFJH_00850 0.44 -0.5
89,556 + OLJFJH_00850 0.44 -0.1
89,557 - OLJFJH_00850 0.44 -0.1
89,557 - OLJFJH_00850 0.44 -0.4
89,557 - OLJFJH_00850 0.44 -0.3
89,557 - OLJFJH_00850 0.44 -1.5
89,557 - OLJFJH_00850 0.44 +2.2
89,557 - OLJFJH_00850 0.44 +0.8
89,557 - OLJFJH_00850 0.44 -0.2
89,660 + OLJFJH_00850 0.57 -0.8
89,661 - OLJFJH_00850 0.57 -0.3
89,791 - OLJFJH_00850 0.74 +0.5
89,803 + OLJFJH_00850 0.75 +1.4
89,803 + OLJFJH_00850 0.75 -0.4
89,804 - OLJFJH_00850 0.75 +0.1
89,804 - OLJFJH_00850 0.75 +0.0
89,838 + OLJFJH_00850 0.79 -0.6
89,838 + OLJFJH_00850 0.79 -0.2
89,839 - OLJFJH_00850 0.79 -0.4
89,839 - OLJFJH_00850 0.79 +0.3
89,884 + OLJFJH_00850 0.85 -0.8
89,928 + -0.1
90,177 - OLJFJH_00855 0.24 +0.3
90,179 + OLJFJH_00855 0.24 -0.1
90,180 - OLJFJH_00855 0.25 -0.1
90,180 - OLJFJH_00855 0.25 +0.1
90,180 - OLJFJH_00855 0.25 -0.2
90,267 - OLJFJH_00855 0.48 +0.1
90,308 - OLJFJH_00855 0.60 +4.9
90,308 - OLJFJH_00855 0.60 +0.1
90,666 + +1.3
90,666 + +0.0
90,667 - -0.3
90,669 - -0.7
90,669 - -1.5

Or see this region's nucleotide sequence