Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_15630

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspeA and OKGIIK_15630 are separated by 125 nucleotidesOKGIIK_15630 and OKGIIK_15635 overlap by 1 nucleotides OKGIIK_15625: speA - biosynthetic arginine decarboxylase, at 3,411,817 to 3,413,706 speA OKGIIK_15630: OKGIIK_15630 - 3-hydroxybutyrate dehydrogenase, at 3,413,832 to 3,414,632 _15630 OKGIIK_15635: OKGIIK_15635 - PNPLA domain-containing protein, at 3,414,632 to 3,415,816 _15635 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3413.766 kb on + strandat 3413.766 kb on + strandat 3413.766 kb on + strandat 3413.767 kb on - strandat 3413.767 kb on - strandat 3413.767 kb on - strandat 3413.767 kb on - strandat 3413.907 kb on + strandat 3413.907 kb on + strandat 3413.907 kb on + strandat 3413.907 kb on + strandat 3413.907 kb on + strandat 3413.908 kb on - strandat 3413.908 kb on - strandat 3413.908 kb on - strandat 3413.908 kb on - strandat 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.219 kb on + strand, within OKGIIK_15630at 3414.220 kb on - strand, within OKGIIK_15630at 3414.220 kb on - strand, within OKGIIK_15630at 3414.220 kb on - strand, within OKGIIK_15630at 3414.220 kb on - strand, within OKGIIK_15630at 3414.220 kb on - strand, within OKGIIK_15630at 3414.220 kb on - strand, within OKGIIK_15630at 3414.220 kb on - strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.264 kb on + strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.265 kb on - strand, within OKGIIK_15630at 3414.313 kb on - strand, within OKGIIK_15630at 3414.313 kb on - strand, within OKGIIK_15630at 3414.558 kb on + strandat 3414.558 kb on + strandat 3414.558 kb on + strandat 3414.558 kb on + strandat 3414.558 kb on + strandat 3414.559 kb on - strandat 3414.559 kb on - strandat 3414.630 kb on + strandat 3414.631 kb on - strandat 3414.631 kb on - strandat 3414.631 kb on - strandat 3414.631 kb on - strandat 3414.631 kb on - strandat 3414.692 kb on - strandat 3414.692 kb on - strandat 3414.736 kb on - strandat 3415.082 kb on + strand, within OKGIIK_15635at 3415.082 kb on + strand, within OKGIIK_15635at 3415.082 kb on + strand, within OKGIIK_15635at 3415.082 kb on + strand, within OKGIIK_15635at 3415.082 kb on + strand, within OKGIIK_15635at 3415.083 kb on - strand, within OKGIIK_15635at 3415.083 kb on - strand, within OKGIIK_15635at 3415.083 kb on - strand, within OKGIIK_15635at 3415.083 kb on - strand, within OKGIIK_15635at 3415.083 kb on - strand, within OKGIIK_15635at 3415.203 kb on - strand, within OKGIIK_15635at 3415.203 kb on - strand, within OKGIIK_15635at 3415.301 kb on + strand, within OKGIIK_15635at 3415.301 kb on + strand, within OKGIIK_15635at 3415.302 kb on - strand, within OKGIIK_15635at 3415.302 kb on - strand, within OKGIIK_15635at 3415.302 kb on - strand, within OKGIIK_15635at 3415.302 kb on - strand, within OKGIIK_15635at 3415.302 kb on - strand, within OKGIIK_15635at 3415.337 kb on + strand, within OKGIIK_15635at 3415.338 kb on - strand, within OKGIIK_15635at 3415.338 kb on - strand, within OKGIIK_15635at 3415.338 kb on - strand, within OKGIIK_15635at 3415.338 kb on - strand, within OKGIIK_15635at 3415.460 kb on + strand, within OKGIIK_15635at 3415.460 kb on + strand, within OKGIIK_15635at 3415.460 kb on + strand, within OKGIIK_15635at 3415.460 kb on + strand, within OKGIIK_15635at 3415.461 kb on - strand, within OKGIIK_15635at 3415.574 kb on + strand, within OKGIIK_15635at 3415.631 kb on + strand, within OKGIIK_15635at 3415.631 kb on + strand, within OKGIIK_15635at 3415.631 kb on + strand, within OKGIIK_15635at 3415.631 kb on + strand, within OKGIIK_15635at 3415.631 kb on + strand, within OKGIIK_15635at 3415.631 kb on + strand, within OKGIIK_15635at 3415.632 kb on - strand, within OKGIIK_15635at 3415.632 kb on - strand, within OKGIIK_15635at 3415.632 kb on - strand, within OKGIIK_15635at 3415.632 kb on - strand, within OKGIIK_15635at 3415.632 kb on - strand, within OKGIIK_15635at 3415.632 kb on - strand, within OKGIIK_15635

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,413,766 + -1.2
3,413,766 + +1.9
3,413,766 + -0.8
3,413,767 - -0.1
3,413,767 - -1.1
3,413,767 - -1.8
3,413,767 - -1.1
3,413,907 + -1.0
3,413,907 + -1.6
3,413,907 + -1.9
3,413,907 + -0.8
3,413,907 + +1.3
3,413,908 - -0.5
3,413,908 - -0.3
3,413,908 - -0.6
3,413,908 - -1.1
3,414,219 + OKGIIK_15630 0.48 -0.1
3,414,219 + OKGIIK_15630 0.48 +0.7
3,414,219 + OKGIIK_15630 0.48 -3.2
3,414,219 + OKGIIK_15630 0.48 +1.0
3,414,219 + OKGIIK_15630 0.48 -0.6
3,414,219 + OKGIIK_15630 0.48 -0.5
3,414,219 + OKGIIK_15630 0.48 -1.1
3,414,219 + OKGIIK_15630 0.48 -0.5
3,414,219 + OKGIIK_15630 0.48 -1.6
3,414,219 + OKGIIK_15630 0.48 -1.1
3,414,220 - OKGIIK_15630 0.48 -2.1
3,414,220 - OKGIIK_15630 0.48 -0.8
3,414,220 - OKGIIK_15630 0.48 +0.8
3,414,220 - OKGIIK_15630 0.48 -1.3
3,414,220 - OKGIIK_15630 0.48 +1.5
3,414,220 - OKGIIK_15630 0.48 -1.3
3,414,220 - OKGIIK_15630 0.48 -1.4
3,414,264 + OKGIIK_15630 0.54 +0.1
3,414,264 + OKGIIK_15630 0.54 -0.6
3,414,264 + OKGIIK_15630 0.54 -0.5
3,414,264 + OKGIIK_15630 0.54 +0.7
3,414,264 + OKGIIK_15630 0.54 -2.2
3,414,264 + OKGIIK_15630 0.54 -0.3
3,414,264 + OKGIIK_15630 0.54 +0.4
3,414,264 + OKGIIK_15630 0.54 +0.1
3,414,264 + OKGIIK_15630 0.54 -0.5
3,414,264 + OKGIIK_15630 0.54 -1.1
3,414,265 - OKGIIK_15630 0.54 -0.1
3,414,265 - OKGIIK_15630 0.54 -0.9
3,414,265 - OKGIIK_15630 0.54 +0.2
3,414,265 - OKGIIK_15630 0.54 +0.1
3,414,265 - OKGIIK_15630 0.54 -0.5
3,414,265 - OKGIIK_15630 0.54 -1.8
3,414,265 - OKGIIK_15630 0.54 -1.6
3,414,265 - OKGIIK_15630 0.54 -1.9
3,414,265 - OKGIIK_15630 0.54 -0.1
3,414,313 - OKGIIK_15630 0.60 +0.1
3,414,313 - OKGIIK_15630 0.60 +0.1
3,414,558 + -0.8
3,414,558 + -1.6
3,414,558 + -0.6
3,414,558 + -0.5
3,414,558 + -0.5
3,414,559 - -1.1
3,414,559 - +0.1
3,414,630 + -1.8
3,414,631 - -1.3
3,414,631 - -0.5
3,414,631 - -1.0
3,414,631 - -0.5
3,414,631 - +0.5
3,414,692 - +0.3
3,414,692 - -0.6
3,414,736 - +0.5
3,415,082 + OKGIIK_15635 0.38 +0.8
3,415,082 + OKGIIK_15635 0.38 -0.0
3,415,082 + OKGIIK_15635 0.38 +0.2
3,415,082 + OKGIIK_15635 0.38 -2.0
3,415,082 + OKGIIK_15635 0.38 -1.0
3,415,083 - OKGIIK_15635 0.38 -0.5
3,415,083 - OKGIIK_15635 0.38 -0.9
3,415,083 - OKGIIK_15635 0.38 +1.0
3,415,083 - OKGIIK_15635 0.38 -1.0
3,415,083 - OKGIIK_15635 0.38 +0.2
3,415,203 - OKGIIK_15635 0.48 -1.0
3,415,203 - OKGIIK_15635 0.48 -1.4
3,415,301 + OKGIIK_15635 0.56 -1.3
3,415,301 + OKGIIK_15635 0.56 -0.4
3,415,302 - OKGIIK_15635 0.57 -0.9
3,415,302 - OKGIIK_15635 0.57 -0.5
3,415,302 - OKGIIK_15635 0.57 +0.2
3,415,302 - OKGIIK_15635 0.57 -0.4
3,415,302 - OKGIIK_15635 0.57 +0.4
3,415,337 + OKGIIK_15635 0.59 -0.8
3,415,338 - OKGIIK_15635 0.60 +0.9
3,415,338 - OKGIIK_15635 0.60 -1.3
3,415,338 - OKGIIK_15635 0.60 +0.6
3,415,338 - OKGIIK_15635 0.60 -0.7
3,415,460 + OKGIIK_15635 0.70 -1.9
3,415,460 + OKGIIK_15635 0.70 -0.9
3,415,460 + OKGIIK_15635 0.70 +0.0
3,415,460 + OKGIIK_15635 0.70 -1.6
3,415,461 - OKGIIK_15635 0.70 +0.1
3,415,574 + OKGIIK_15635 0.79 -0.6
3,415,631 + OKGIIK_15635 0.84 +0.4
3,415,631 + OKGIIK_15635 0.84 +0.5
3,415,631 + OKGIIK_15635 0.84 -0.6
3,415,631 + OKGIIK_15635 0.84 +0.5
3,415,631 + OKGIIK_15635 0.84 +0.1
3,415,631 + OKGIIK_15635 0.84 +0.2
3,415,632 - OKGIIK_15635 0.84 +0.4
3,415,632 - OKGIIK_15635 0.84 -0.8
3,415,632 - OKGIIK_15635 0.84 -0.8
3,415,632 - OKGIIK_15635 0.84 +0.4
3,415,632 - OKGIIK_15635 0.84 +0.9
3,415,632 - OKGIIK_15635 0.84 +0.4

Or see this region's nucleotide sequence