Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14680

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_14675 and OKGIIK_14680 are separated by 7 nucleotidesOKGIIK_14680 and OKGIIK_14685 are separated by 94 nucleotidesOKGIIK_14685 and OKGIIK_14690 are separated by 1 nucleotides OKGIIK_14675: OKGIIK_14675 - Mg-protoporphyrin IX monomethyl ester oxidative cyclase, at 3,199,933 to 3,201,405 _14675 OKGIIK_14680: OKGIIK_14680 - hypothetical protein, at 3,201,413 to 3,202,660 _14680 OKGIIK_14685: OKGIIK_14685 - Methyltransferase family protein, at 3,202,755 to 3,203,384 _14685 OKGIIK_14690: OKGIIK_14690 - Flavin-Reduct domain-containing protein, at 3,203,386 to 3,204,309 _14690 Position (kb) 3201 3202 3203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3200.551 kb on + strand, within OKGIIK_14675at 3200.551 kb on + strand, within OKGIIK_14675at 3200.552 kb on - strand, within OKGIIK_14675at 3200.552 kb on - strand, within OKGIIK_14675at 3200.552 kb on - strand, within OKGIIK_14675at 3200.552 kb on - strand, within OKGIIK_14675at 3200.632 kb on + strand, within OKGIIK_14675at 3200.632 kb on + strand, within OKGIIK_14675at 3200.632 kb on + strand, within OKGIIK_14675at 3200.632 kb on + strand, within OKGIIK_14675at 3200.632 kb on + strand, within OKGIIK_14675at 3200.632 kb on + strand, within OKGIIK_14675at 3200.633 kb on - strand, within OKGIIK_14675at 3200.633 kb on - strand, within OKGIIK_14675at 3200.633 kb on - strand, within OKGIIK_14675at 3200.633 kb on - strand, within OKGIIK_14675at 3200.633 kb on - strand, within OKGIIK_14675at 3200.633 kb on - strand, within OKGIIK_14675at 3200.633 kb on - strand, within OKGIIK_14675at 3200.674 kb on + strand, within OKGIIK_14675at 3200.674 kb on + strand, within OKGIIK_14675at 3200.674 kb on + strand, within OKGIIK_14675at 3200.674 kb on + strand, within OKGIIK_14675at 3200.674 kb on + strand, within OKGIIK_14675at 3200.674 kb on + strand, within OKGIIK_14675at 3200.675 kb on - strand, within OKGIIK_14675at 3200.675 kb on - strand, within OKGIIK_14675at 3200.675 kb on - strand, within OKGIIK_14675at 3200.675 kb on - strand, within OKGIIK_14675at 3200.675 kb on - strand, within OKGIIK_14675at 3200.675 kb on - strand, within OKGIIK_14675at 3200.675 kb on - strand, within OKGIIK_14675at 3201.008 kb on - strand, within OKGIIK_14675at 3201.118 kb on - strand, within OKGIIK_14675at 3201.119 kb on - strand, within OKGIIK_14675at 3201.119 kb on - strand, within OKGIIK_14675at 3201.119 kb on - strand, within OKGIIK_14675at 3201.119 kb on - strand, within OKGIIK_14675at 3201.119 kb on - strand, within OKGIIK_14675at 3201.119 kb on - strand, within OKGIIK_14675at 3201.200 kb on - strand, within OKGIIK_14675at 3201.215 kb on - strand, within OKGIIK_14675at 3201.215 kb on - strand, within OKGIIK_14675at 3201.215 kb on - strand, within OKGIIK_14675at 3201.220 kb on - strand, within OKGIIK_14675at 3201.220 kb on - strand, within OKGIIK_14675at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.755 kb on + strand, within OKGIIK_14680at 3201.756 kb on - strand, within OKGIIK_14680at 3201.756 kb on - strand, within OKGIIK_14680at 3201.756 kb on - strand, within OKGIIK_14680at 3201.908 kb on + strand, within OKGIIK_14680at 3201.909 kb on - strand, within OKGIIK_14680at 3201.959 kb on - strand, within OKGIIK_14680at 3202.424 kb on + strand, within OKGIIK_14680at 3202.425 kb on - strand, within OKGIIK_14680at 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.586 kb on + strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.587 kb on - strandat 3202.593 kb on + strandat 3202.594 kb on - strandat 3202.594 kb on - strandat 3202.594 kb on - strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.773 kb on + strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.774 kb on - strandat 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.908 kb on + strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.909 kb on - strand, within OKGIIK_14685at 3202.938 kb on + strand, within OKGIIK_14685at 3202.938 kb on + strand, within OKGIIK_14685at 3202.939 kb on - strand, within OKGIIK_14685at 3202.966 kb on - strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.977 kb on + strand, within OKGIIK_14685at 3202.978 kb on - strand, within OKGIIK_14685at 3202.978 kb on - strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.163 kb on + strand, within OKGIIK_14685at 3203.164 kb on - strand, within OKGIIK_14685at 3203.164 kb on - strand, within OKGIIK_14685at 3203.164 kb on - strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.166 kb on + strand, within OKGIIK_14685at 3203.167 kb on - strand, within OKGIIK_14685at 3203.167 kb on - strand, within OKGIIK_14685at 3203.167 kb on - strand, within OKGIIK_14685at 3203.232 kb on + strand, within OKGIIK_14685at 3203.233 kb on - strand, within OKGIIK_14685at 3203.302 kb on - strand, within OKGIIK_14685at 3203.302 kb on - strand, within OKGIIK_14685at 3203.355 kb on + strandat 3203.355 kb on + strandat 3203.356 kb on - strandat 3203.356 kb on - strandat 3203.356 kb on - strandat 3203.402 kb on + strandat 3203.414 kb on + strandat 3203.414 kb on + strandat 3203.414 kb on + strandat 3203.415 kb on - strandat 3203.520 kb on + strand, within OKGIIK_14690at 3203.520 kb on + strand, within OKGIIK_14690at 3203.521 kb on - strand, within OKGIIK_14690at 3203.521 kb on - strand, within OKGIIK_14690at 3203.521 kb on - strand, within OKGIIK_14690at 3203.590 kb on + strand, within OKGIIK_14690at 3203.591 kb on - strand, within OKGIIK_14690at 3203.591 kb on - strand, within OKGIIK_14690at 3203.591 kb on - strand, within OKGIIK_14690at 3203.646 kb on - strand, within OKGIIK_14690

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,200,551 + OKGIIK_14675 0.42 -0.2
3,200,551 + OKGIIK_14675 0.42 +1.1
3,200,552 - OKGIIK_14675 0.42 -0.1
3,200,552 - OKGIIK_14675 0.42 -0.3
3,200,552 - OKGIIK_14675 0.42 -0.8
3,200,552 - OKGIIK_14675 0.42 +1.0
3,200,632 + OKGIIK_14675 0.47 +0.4
3,200,632 + OKGIIK_14675 0.47 -1.5
3,200,632 + OKGIIK_14675 0.47 -0.3
3,200,632 + OKGIIK_14675 0.47 -0.5
3,200,632 + OKGIIK_14675 0.47 -0.3
3,200,632 + OKGIIK_14675 0.47 -2.5
3,200,633 - OKGIIK_14675 0.48 -2.8
3,200,633 - OKGIIK_14675 0.48 -0.1
3,200,633 - OKGIIK_14675 0.48 -1.1
3,200,633 - OKGIIK_14675 0.48 -0.4
3,200,633 - OKGIIK_14675 0.48 -1.1
3,200,633 - OKGIIK_14675 0.48 +0.4
3,200,633 - OKGIIK_14675 0.48 +1.1
3,200,674 + OKGIIK_14675 0.50 -1.1
3,200,674 + OKGIIK_14675 0.50 -1.5
3,200,674 + OKGIIK_14675 0.50 -0.8
3,200,674 + OKGIIK_14675 0.50 -1.4
3,200,674 + OKGIIK_14675 0.50 -1.3
3,200,674 + OKGIIK_14675 0.50 -0.4
3,200,675 - OKGIIK_14675 0.50 -0.2
3,200,675 - OKGIIK_14675 0.50 -0.6
3,200,675 - OKGIIK_14675 0.50 -1.5
3,200,675 - OKGIIK_14675 0.50 -0.5
3,200,675 - OKGIIK_14675 0.50 +0.9
3,200,675 - OKGIIK_14675 0.50 -0.5
3,200,675 - OKGIIK_14675 0.50 +0.3
3,201,008 - OKGIIK_14675 0.73 +0.1
3,201,118 - OKGIIK_14675 0.80 -0.7
3,201,119 - OKGIIK_14675 0.81 -0.7
3,201,119 - OKGIIK_14675 0.81 -0.7
3,201,119 - OKGIIK_14675 0.81 -0.1
3,201,119 - OKGIIK_14675 0.81 -2.1
3,201,119 - OKGIIK_14675 0.81 +1.8
3,201,119 - OKGIIK_14675 0.81 +0.9
3,201,200 - OKGIIK_14675 0.86 -2.1
3,201,215 - OKGIIK_14675 0.87 -0.9
3,201,215 - OKGIIK_14675 0.87 -0.1
3,201,215 - OKGIIK_14675 0.87 +0.1
3,201,220 - OKGIIK_14675 0.87 +1.5
3,201,220 - OKGIIK_14675 0.87 -0.3
3,201,755 + OKGIIK_14680 0.27 +0.2
3,201,755 + OKGIIK_14680 0.27 -0.5
3,201,755 + OKGIIK_14680 0.27 -0.6
3,201,755 + OKGIIK_14680 0.27 -1.8
3,201,755 + OKGIIK_14680 0.27 +0.8
3,201,755 + OKGIIK_14680 0.27 -0.1
3,201,756 - OKGIIK_14680 0.27 +0.5
3,201,756 - OKGIIK_14680 0.27 -0.7
3,201,756 - OKGIIK_14680 0.27 -0.3
3,201,908 + OKGIIK_14680 0.40 -0.2
3,201,909 - OKGIIK_14680 0.40 +0.2
3,201,959 - OKGIIK_14680 0.44 +1.3
3,202,424 + OKGIIK_14680 0.81 +1.1
3,202,425 - OKGIIK_14680 0.81 -0.3
3,202,586 + -1.6
3,202,586 + +0.9
3,202,586 + +0.4
3,202,586 + +0.2
3,202,586 + -0.7
3,202,586 + +1.0
3,202,586 + +0.4
3,202,586 + -0.4
3,202,586 + +0.1
3,202,586 + -0.1
3,202,587 - +0.4
3,202,587 - +1.1
3,202,587 - +0.2
3,202,587 - -0.2
3,202,587 - -0.6
3,202,587 - -0.8
3,202,587 - -0.5
3,202,587 - +1.3
3,202,587 - +0.5
3,202,587 - -1.8
3,202,587 - -0.4
3,202,587 - +0.8
3,202,587 - -0.7
3,202,587 - -0.1
3,202,587 - -0.5
3,202,587 - -1.4
3,202,587 - -0.8
3,202,587 - +0.2
3,202,587 - -0.1
3,202,593 + -0.2
3,202,594 - -1.8
3,202,594 - -0.5
3,202,594 - -0.9
3,202,773 + -0.5
3,202,773 + +1.1
3,202,773 + +0.4
3,202,773 + -0.5
3,202,773 + -0.9
3,202,774 - -0.5
3,202,774 - +1.2
3,202,774 - +0.2
3,202,774 - +0.9
3,202,774 - -0.7
3,202,908 + OKGIIK_14685 0.24 -0.9
3,202,908 + OKGIIK_14685 0.24 -0.8
3,202,908 + OKGIIK_14685 0.24 -0.5
3,202,908 + OKGIIK_14685 0.24 +0.1
3,202,908 + OKGIIK_14685 0.24 +0.3
3,202,908 + OKGIIK_14685 0.24 +0.4
3,202,908 + OKGIIK_14685 0.24 -1.4
3,202,908 + OKGIIK_14685 0.24 +0.7
3,202,908 + OKGIIK_14685 0.24 +0.6
3,202,908 + OKGIIK_14685 0.24 +0.8
3,202,909 - OKGIIK_14685 0.24 +0.2
3,202,909 - OKGIIK_14685 0.24 +0.4
3,202,909 - OKGIIK_14685 0.24 -1.2
3,202,909 - OKGIIK_14685 0.24 -0.8
3,202,909 - OKGIIK_14685 0.24 -2.2
3,202,909 - OKGIIK_14685 0.24 +0.0
3,202,909 - OKGIIK_14685 0.24 +0.5
3,202,909 - OKGIIK_14685 0.24 -0.4
3,202,909 - OKGIIK_14685 0.24 -0.4
3,202,909 - OKGIIK_14685 0.24 -1.6
3,202,909 - OKGIIK_14685 0.24 +0.5
3,202,938 + OKGIIK_14685 0.29 -2.2
3,202,938 + OKGIIK_14685 0.29 -0.6
3,202,939 - OKGIIK_14685 0.29 -1.3
3,202,966 - OKGIIK_14685 0.33 -1.3
3,202,977 + OKGIIK_14685 0.35 +0.4
3,202,977 + OKGIIK_14685 0.35 -0.5
3,202,977 + OKGIIK_14685 0.35 -2.1
3,202,977 + OKGIIK_14685 0.35 -1.8
3,202,977 + OKGIIK_14685 0.35 -2.2
3,202,978 - OKGIIK_14685 0.35 -0.8
3,202,978 - OKGIIK_14685 0.35 +1.1
3,203,163 + OKGIIK_14685 0.65 +0.1
3,203,163 + OKGIIK_14685 0.65 -1.8
3,203,163 + OKGIIK_14685 0.65 -1.1
3,203,163 + OKGIIK_14685 0.65 -0.6
3,203,163 + OKGIIK_14685 0.65 +0.7
3,203,164 - OKGIIK_14685 0.65 +1.8
3,203,164 - OKGIIK_14685 0.65 -0.2
3,203,164 - OKGIIK_14685 0.65 -0.1
3,203,166 + OKGIIK_14685 0.65 +0.7
3,203,166 + OKGIIK_14685 0.65 +0.6
3,203,166 + OKGIIK_14685 0.65 -0.3
3,203,166 + OKGIIK_14685 0.65 -0.1
3,203,167 - OKGIIK_14685 0.65 -0.0
3,203,167 - OKGIIK_14685 0.65 +1.5
3,203,167 - OKGIIK_14685 0.65 +0.1
3,203,232 + OKGIIK_14685 0.76 -1.8
3,203,233 - OKGIIK_14685 0.76 +0.3
3,203,302 - OKGIIK_14685 0.87 -0.9
3,203,302 - OKGIIK_14685 0.87 +0.8
3,203,355 + -1.5
3,203,355 + -1.3
3,203,356 - -2.7
3,203,356 - -1.5
3,203,356 - -0.8
3,203,402 + +0.1
3,203,414 + +0.0
3,203,414 + -0.2
3,203,414 + -0.5
3,203,415 - +0.7
3,203,520 + OKGIIK_14690 0.15 -0.3
3,203,520 + OKGIIK_14690 0.15 -2.1
3,203,521 - OKGIIK_14690 0.15 -0.8
3,203,521 - OKGIIK_14690 0.15 -0.1
3,203,521 - OKGIIK_14690 0.15 +0.7
3,203,590 + OKGIIK_14690 0.22 +1.0
3,203,591 - OKGIIK_14690 0.22 +1.1
3,203,591 - OKGIIK_14690 0.22 +0.6
3,203,591 - OKGIIK_14690 0.22 +0.6
3,203,646 - OKGIIK_14690 0.28 +0.2

Or see this region's nucleotide sequence