Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14355

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntagaS and mngR are separated by 9 nucleotidesmngR and zwf are separated by 302 nucleotides OKGIIK_14350: agaS - iron dicitrate transport regulator FecR, at 3,134,931 to 3,135,962 agaS OKGIIK_14355: mngR - GntR family transcriptional regulator, at 3,135,972 to 3,136,724 mngR OKGIIK_14360: zwf - glucose-6-phosphate dehydrogenase, at 3,137,027 to 3,138,490 zwf Position (kb) 3135 3136 3137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3135.017 kb on - strandat 3135.114 kb on + strand, within agaSat 3135.114 kb on + strand, within agaSat 3135.114 kb on + strand, within agaSat 3135.114 kb on + strand, within agaSat 3135.114 kb on + strand, within agaSat 3135.115 kb on - strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.499 kb on + strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.500 kb on - strand, within agaSat 3135.715 kb on + strand, within agaSat 3135.715 kb on + strand, within agaSat 3135.716 kb on - strand, within agaSat 3135.716 kb on - strand, within agaSat 3135.716 kb on - strand, within agaSat 3135.776 kb on + strand, within agaSat 3135.778 kb on + strand, within agaSat 3135.778 kb on + strand, within agaSat 3135.778 kb on + strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.779 kb on - strand, within agaSat 3135.788 kb on - strand, within agaSat 3135.937 kb on + strandat 3135.937 kb on + strandat 3135.937 kb on + strandat 3135.937 kb on + strandat 3135.937 kb on + strandat 3135.937 kb on + strandat 3135.937 kb on + strandat 3135.938 kb on - strandat 3135.938 kb on - strandat 3136.003 kb on + strandat 3136.003 kb on + strandat 3136.003 kb on + strandat 3136.003 kb on + strandat 3136.003 kb on + strandat 3136.003 kb on + strandat 3136.003 kb on + strandat 3136.004 kb on - strandat 3136.004 kb on - strandat 3136.004 kb on - strandat 3136.018 kb on + strandat 3136.019 kb on - strandat 3136.198 kb on + strand, within mngRat 3136.198 kb on + strand, within mngRat 3136.198 kb on + strand, within mngRat 3136.198 kb on + strand, within mngRat 3136.198 kb on + strand, within mngRat 3136.199 kb on - strand, within mngRat 3136.199 kb on - strand, within mngRat 3136.199 kb on - strand, within mngRat 3136.654 kb on + strandat 3136.654 kb on + strandat 3136.654 kb on + strandat 3136.654 kb on + strandat 3136.655 kb on - strandat 3136.655 kb on - strandat 3136.735 kb on + strandat 3136.735 kb on + strandat 3136.736 kb on - strandat 3136.741 kb on + strandat 3136.741 kb on + strandat 3136.742 kb on - strandat 3136.849 kb on - strandat 3136.916 kb on + strandat 3136.916 kb on + strandat 3136.916 kb on + strandat 3136.916 kb on + strandat 3136.916 kb on + strandat 3136.916 kb on + strandat 3136.916 kb on + strandat 3136.917 kb on - strandat 3136.917 kb on - strandat 3136.940 kb on + strandat 3136.960 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,135,017 - -2.1
3,135,114 + agaS OKGIIK_14350 0.18 +0.9
3,135,114 + agaS OKGIIK_14350 0.18 -0.3
3,135,114 + agaS OKGIIK_14350 0.18 -1.6
3,135,114 + agaS OKGIIK_14350 0.18 -0.5
3,135,114 + agaS OKGIIK_14350 0.18 -0.8
3,135,115 - agaS OKGIIK_14350 0.18 -0.8
3,135,499 + agaS OKGIIK_14350 0.55 +1.0
3,135,499 + agaS OKGIIK_14350 0.55 -1.6
3,135,499 + agaS OKGIIK_14350 0.55 -0.8
3,135,499 + agaS OKGIIK_14350 0.55 +1.8
3,135,499 + agaS OKGIIK_14350 0.55 +0.9
3,135,499 + agaS OKGIIK_14350 0.55 -1.5
3,135,499 + agaS OKGIIK_14350 0.55 +0.1
3,135,499 + agaS OKGIIK_14350 0.55 -1.3
3,135,499 + agaS OKGIIK_14350 0.55 -0.9
3,135,500 - agaS OKGIIK_14350 0.55 -0.2
3,135,500 - agaS OKGIIK_14350 0.55 -1.2
3,135,500 - agaS OKGIIK_14350 0.55 -1.9
3,135,500 - agaS OKGIIK_14350 0.55 -0.3
3,135,500 - agaS OKGIIK_14350 0.55 +0.2
3,135,500 - agaS OKGIIK_14350 0.55 -0.4
3,135,500 - agaS OKGIIK_14350 0.55 +2.0
3,135,500 - agaS OKGIIK_14350 0.55 +0.7
3,135,500 - agaS OKGIIK_14350 0.55 +1.1
3,135,500 - agaS OKGIIK_14350 0.55 +0.2
3,135,715 + agaS OKGIIK_14350 0.76 -1.8
3,135,715 + agaS OKGIIK_14350 0.76 +0.1
3,135,716 - agaS OKGIIK_14350 0.76 -1.2
3,135,716 - agaS OKGIIK_14350 0.76 +0.1
3,135,716 - agaS OKGIIK_14350 0.76 -0.7
3,135,776 + agaS OKGIIK_14350 0.82 -0.6
3,135,778 + agaS OKGIIK_14350 0.82 +0.4
3,135,778 + agaS OKGIIK_14350 0.82 -1.6
3,135,778 + agaS OKGIIK_14350 0.82 -0.4
3,135,779 - agaS OKGIIK_14350 0.82 +0.4
3,135,779 - agaS OKGIIK_14350 0.82 -1.6
3,135,779 - agaS OKGIIK_14350 0.82 -1.0
3,135,779 - agaS OKGIIK_14350 0.82 -0.7
3,135,779 - agaS OKGIIK_14350 0.82 +0.8
3,135,779 - agaS OKGIIK_14350 0.82 +1.2
3,135,779 - agaS OKGIIK_14350 0.82 -0.1
3,135,779 - agaS OKGIIK_14350 0.82 +0.8
3,135,779 - agaS OKGIIK_14350 0.82 +2.3
3,135,779 - agaS OKGIIK_14350 0.82 +0.4
3,135,779 - agaS OKGIIK_14350 0.82 -0.6
3,135,779 - agaS OKGIIK_14350 0.82 +0.7
3,135,779 - agaS OKGIIK_14350 0.82 -0.1
3,135,788 - agaS OKGIIK_14350 0.83 -0.2
3,135,937 + -0.9
3,135,937 + +0.0
3,135,937 + -0.8
3,135,937 + +1.1
3,135,937 + -0.5
3,135,937 + +0.8
3,135,937 + -0.2
3,135,938 - -0.3
3,135,938 - -0.9
3,136,003 + -0.4
3,136,003 + +0.8
3,136,003 + -1.3
3,136,003 + -0.9
3,136,003 + -0.8
3,136,003 + -0.3
3,136,003 + +0.2
3,136,004 - -0.1
3,136,004 - -0.3
3,136,004 - -0.5
3,136,018 + +0.9
3,136,019 - +0.0
3,136,198 + mngR OKGIIK_14355 0.30 -1.6
3,136,198 + mngR OKGIIK_14355 0.30 -0.5
3,136,198 + mngR OKGIIK_14355 0.30 -0.8
3,136,198 + mngR OKGIIK_14355 0.30 +0.5
3,136,198 + mngR OKGIIK_14355 0.30 -0.6
3,136,199 - mngR OKGIIK_14355 0.30 +0.5
3,136,199 - mngR OKGIIK_14355 0.30 +0.6
3,136,199 - mngR OKGIIK_14355 0.30 +0.1
3,136,654 + +0.8
3,136,654 + -1.7
3,136,654 + -0.9
3,136,654 + -0.6
3,136,655 - -1.1
3,136,655 - -0.3
3,136,735 + -1.3
3,136,735 + +0.2
3,136,736 - -0.7
3,136,741 + -1.0
3,136,741 + -2.5
3,136,742 - -2.9
3,136,849 - -1.3
3,136,916 + -1.3
3,136,916 + -0.8
3,136,916 + +0.9
3,136,916 + -0.1
3,136,916 + -1.9
3,136,916 + -1.0
3,136,916 + +0.1
3,136,917 - -1.8
3,136,917 - -1.5
3,136,940 + +0.5
3,136,960 + +0.1

Or see this region's nucleotide sequence