Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_06035

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcusA and ompR are separated by 5 nucleotidesompR and OKGIIK_06040 overlap by 11 nucleotides OKGIIK_06030: cusA - CusA/CzcA family heavy metal efflux RND transporter, at 1,327,860 to 1,330,994 cusA OKGIIK_06035: ompR - DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain, at 1,331,000 to 1,331,680 ompR OKGIIK_06040: OKGIIK_06040 - Histidine kinase, at 1,331,670 to 1,332,914 _06040 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -2 -1 0 1 2at 1330.105 kb on - strand, within cusAat 1330.105 kb on - strand, within cusAat 1330.236 kb on + strand, within cusAat 1330.236 kb on + strand, within cusAat 1330.236 kb on + strand, within cusAat 1330.236 kb on + strand, within cusAat 1330.236 kb on + strand, within cusAat 1330.236 kb on + strand, within cusAat 1330.237 kb on - strand, within cusAat 1330.237 kb on - strand, within cusAat 1330.237 kb on - strand, within cusAat 1330.237 kb on - strand, within cusAat 1330.237 kb on - strand, within cusAat 1330.237 kb on - strand, within cusAat 1330.237 kb on - strand, within cusAat 1330.266 kb on + strand, within cusAat 1330.266 kb on + strand, within cusAat 1330.266 kb on + strand, within cusAat 1330.267 kb on - strand, within cusAat 1330.267 kb on - strand, within cusAat 1330.267 kb on - strand, within cusAat 1330.267 kb on - strand, within cusAat 1330.284 kb on + strand, within cusAat 1330.416 kb on + strand, within cusAat 1330.416 kb on + strand, within cusAat 1330.416 kb on + strand, within cusAat 1330.417 kb on - strand, within cusAat 1330.417 kb on - strand, within cusAat 1330.417 kb on - strand, within cusAat 1330.696 kb on - strandat 1330.696 kb on - strandat 1330.696 kb on - strandat 1331.058 kb on - strandat 1331.094 kb on - strand, within ompRat 1331.094 kb on - strand, within ompRat 1331.294 kb on + strand, within ompRat 1331.295 kb on - strand, within ompRat 1331.295 kb on - strand, within ompRat 1331.314 kb on + strand, within ompRat 1331.315 kb on - strand, within ompRat 1331.402 kb on + strand, within ompRat 1331.403 kb on - strand, within ompRat 1331.403 kb on - strand, within ompRat 1331.626 kb on - strandat 1331.626 kb on - strandat 1331.644 kb on + strandat 1331.678 kb on + strandat 1331.679 kb on - strandat 1331.679 kb on - strandat 1331.679 kb on - strandat 1331.702 kb on + strandat 1331.703 kb on - strandat 1331.855 kb on + strand, within OKGIIK_06040at 1331.856 kb on - strand, within OKGIIK_06040at 1331.864 kb on - strand, within OKGIIK_06040at 1331.883 kb on + strand, within OKGIIK_06040at 1331.883 kb on + strand, within OKGIIK_06040at 1331.883 kb on + strand, within OKGIIK_06040at 1331.883 kb on + strand, within OKGIIK_06040at 1331.883 kb on + strand, within OKGIIK_06040at 1331.883 kb on + strand, within OKGIIK_06040at 1331.883 kb on + strand, within OKGIIK_06040at 1331.884 kb on - strand, within OKGIIK_06040at 1331.884 kb on - strand, within OKGIIK_06040at 1331.889 kb on + strand, within OKGIIK_06040at 1331.889 kb on + strand, within OKGIIK_06040at 1331.889 kb on + strand, within OKGIIK_06040at 1331.890 kb on - strand, within OKGIIK_06040at 1331.890 kb on - strand, within OKGIIK_06040at 1331.920 kb on + strand, within OKGIIK_06040at 1331.921 kb on - strand, within OKGIIK_06040at 1331.921 kb on - strand, within OKGIIK_06040at 1331.921 kb on - strand, within OKGIIK_06040at 1331.959 kb on + strand, within OKGIIK_06040at 1331.959 kb on + strand, within OKGIIK_06040at 1331.959 kb on + strand, within OKGIIK_06040at 1331.960 kb on - strand, within OKGIIK_06040at 1331.960 kb on - strand, within OKGIIK_06040at 1331.960 kb on - strand, within OKGIIK_06040at 1331.960 kb on - strand, within OKGIIK_06040at 1331.960 kb on - strand, within OKGIIK_06040at 1331.988 kb on + strand, within OKGIIK_06040at 1331.988 kb on + strand, within OKGIIK_06040at 1331.988 kb on + strand, within OKGIIK_06040at 1331.988 kb on + strand, within OKGIIK_06040at 1331.989 kb on - strand, within OKGIIK_06040at 1331.989 kb on - strand, within OKGIIK_06040at 1331.989 kb on - strand, within OKGIIK_06040at 1331.989 kb on - strand, within OKGIIK_06040at 1331.989 kb on - strand, within OKGIIK_06040at 1331.989 kb on - strand, within OKGIIK_06040at 1332.024 kb on + strand, within OKGIIK_06040at 1332.109 kb on + strand, within OKGIIK_06040at 1332.109 kb on + strand, within OKGIIK_06040at 1332.109 kb on + strand, within OKGIIK_06040at 1332.110 kb on - strand, within OKGIIK_06040at 1332.209 kb on + strand, within OKGIIK_06040at 1332.221 kb on + strand, within OKGIIK_06040at 1332.222 kb on - strand, within OKGIIK_06040at 1332.273 kb on + strand, within OKGIIK_06040at 1332.273 kb on + strand, within OKGIIK_06040at 1332.273 kb on + strand, within OKGIIK_06040at 1332.274 kb on - strand, within OKGIIK_06040at 1332.274 kb on - strand, within OKGIIK_06040at 1332.274 kb on - strand, within OKGIIK_06040at 1332.361 kb on + strand, within OKGIIK_06040at 1332.361 kb on + strand, within OKGIIK_06040at 1332.361 kb on + strand, within OKGIIK_06040at 1332.362 kb on - strand, within OKGIIK_06040at 1332.362 kb on - strand, within OKGIIK_06040at 1332.379 kb on + strand, within OKGIIK_06040at 1332.380 kb on - strand, within OKGIIK_06040at 1332.400 kb on + strand, within OKGIIK_06040at 1332.401 kb on - strand, within OKGIIK_06040at 1332.443 kb on + strand, within OKGIIK_06040at 1332.480 kb on + strand, within OKGIIK_06040at 1332.480 kb on + strand, within OKGIIK_06040at 1332.480 kb on + strand, within OKGIIK_06040at 1332.481 kb on - strand, within OKGIIK_06040at 1332.481 kb on - strand, within OKGIIK_06040at 1332.481 kb on - strand, within OKGIIK_06040at 1332.540 kb on + strand, within OKGIIK_06040at 1332.541 kb on + strand, within OKGIIK_06040at 1332.542 kb on - strand, within OKGIIK_06040at 1332.542 kb on - strand, within OKGIIK_06040at 1332.664 kb on + strand, within OKGIIK_06040at 1332.664 kb on + strand, within OKGIIK_06040at 1332.664 kb on + strand, within OKGIIK_06040

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,330,105 - cusA OKGIIK_06030 0.72 -1.3
1,330,105 - cusA OKGIIK_06030 0.72 +0.2
1,330,236 + cusA OKGIIK_06030 0.76 +1.2
1,330,236 + cusA OKGIIK_06030 0.76 -0.7
1,330,236 + cusA OKGIIK_06030 0.76 -1.4
1,330,236 + cusA OKGIIK_06030 0.76 -1.7
1,330,236 + cusA OKGIIK_06030 0.76 -2.0
1,330,236 + cusA OKGIIK_06030 0.76 -0.2
1,330,237 - cusA OKGIIK_06030 0.76 +2.1
1,330,237 - cusA OKGIIK_06030 0.76 +0.9
1,330,237 - cusA OKGIIK_06030 0.76 -0.4
1,330,237 - cusA OKGIIK_06030 0.76 +0.4
1,330,237 - cusA OKGIIK_06030 0.76 +1.6
1,330,237 - cusA OKGIIK_06030 0.76 -1.7
1,330,237 - cusA OKGIIK_06030 0.76 +2.5
1,330,266 + cusA OKGIIK_06030 0.77 -0.5
1,330,266 + cusA OKGIIK_06030 0.77 +0.6
1,330,266 + cusA OKGIIK_06030 0.77 -0.7
1,330,267 - cusA OKGIIK_06030 0.77 -0.4
1,330,267 - cusA OKGIIK_06030 0.77 -0.1
1,330,267 - cusA OKGIIK_06030 0.77 -0.9
1,330,267 - cusA OKGIIK_06030 0.77 +0.1
1,330,284 + cusA OKGIIK_06030 0.77 +0.1
1,330,416 + cusA OKGIIK_06030 0.82 +0.0
1,330,416 + cusA OKGIIK_06030 0.82 -0.9
1,330,416 + cusA OKGIIK_06030 0.82 +0.6
1,330,417 - cusA OKGIIK_06030 0.82 -1.9
1,330,417 - cusA OKGIIK_06030 0.82 -1.1
1,330,417 - cusA OKGIIK_06030 0.82 -0.7
1,330,696 - +0.9
1,330,696 - +0.6
1,330,696 - +0.3
1,331,058 - -0.4
1,331,094 - ompR OKGIIK_06035 0.14 -1.3
1,331,094 - ompR OKGIIK_06035 0.14 -0.1
1,331,294 + ompR OKGIIK_06035 0.43 -1.7
1,331,295 - ompR OKGIIK_06035 0.43 +0.5
1,331,295 - ompR OKGIIK_06035 0.43 +0.3
1,331,314 + ompR OKGIIK_06035 0.46 +0.6
1,331,315 - ompR OKGIIK_06035 0.46 -1.0
1,331,402 + ompR OKGIIK_06035 0.59 -1.3
1,331,403 - ompR OKGIIK_06035 0.59 -0.7
1,331,403 - ompR OKGIIK_06035 0.59 +0.6
1,331,626 - +0.3
1,331,626 - -0.1
1,331,644 + +0.6
1,331,678 + +0.3
1,331,679 - -0.1
1,331,679 - -1.9
1,331,679 - -2.2
1,331,702 + -0.6
1,331,703 - -1.3
1,331,855 + OKGIIK_06040 0.15 +2.1
1,331,856 - OKGIIK_06040 0.15 -1.3
1,331,864 - OKGIIK_06040 0.16 -0.2
1,331,883 + OKGIIK_06040 0.17 +0.2
1,331,883 + OKGIIK_06040 0.17 +0.1
1,331,883 + OKGIIK_06040 0.17 -0.4
1,331,883 + OKGIIK_06040 0.17 +0.5
1,331,883 + OKGIIK_06040 0.17 -1.3
1,331,883 + OKGIIK_06040 0.17 -0.3
1,331,883 + OKGIIK_06040 0.17 -1.1
1,331,884 - OKGIIK_06040 0.17 -0.7
1,331,884 - OKGIIK_06040 0.17 -0.1
1,331,889 + OKGIIK_06040 0.18 -0.6
1,331,889 + OKGIIK_06040 0.18 -0.4
1,331,889 + OKGIIK_06040 0.18 +0.3
1,331,890 - OKGIIK_06040 0.18 -1.3
1,331,890 - OKGIIK_06040 0.18 -1.3
1,331,920 + OKGIIK_06040 0.20 +0.9
1,331,921 - OKGIIK_06040 0.20 +0.8
1,331,921 - OKGIIK_06040 0.20 +0.3
1,331,921 - OKGIIK_06040 0.20 +0.6
1,331,959 + OKGIIK_06040 0.23 -0.1
1,331,959 + OKGIIK_06040 0.23 -0.9
1,331,959 + OKGIIK_06040 0.23 +1.5
1,331,960 - OKGIIK_06040 0.23 -0.7
1,331,960 - OKGIIK_06040 0.23 -1.1
1,331,960 - OKGIIK_06040 0.23 -0.7
1,331,960 - OKGIIK_06040 0.23 -0.9
1,331,960 - OKGIIK_06040 0.23 -1.3
1,331,988 + OKGIIK_06040 0.26 +0.2
1,331,988 + OKGIIK_06040 0.26 -0.7
1,331,988 + OKGIIK_06040 0.26 -0.6
1,331,988 + OKGIIK_06040 0.26 -1.1
1,331,989 - OKGIIK_06040 0.26 -1.6
1,331,989 - OKGIIK_06040 0.26 -0.8
1,331,989 - OKGIIK_06040 0.26 +0.9
1,331,989 - OKGIIK_06040 0.26 +0.5
1,331,989 - OKGIIK_06040 0.26 +0.2
1,331,989 - OKGIIK_06040 0.26 -0.6
1,332,024 + OKGIIK_06040 0.28 -0.1
1,332,109 + OKGIIK_06040 0.35 -0.6
1,332,109 + OKGIIK_06040 0.35 +0.9
1,332,109 + OKGIIK_06040 0.35 -1.0
1,332,110 - OKGIIK_06040 0.35 -0.7
1,332,209 + OKGIIK_06040 0.43 -1.6
1,332,221 + OKGIIK_06040 0.44 -1.3
1,332,222 - OKGIIK_06040 0.44 -0.8
1,332,273 + OKGIIK_06040 0.48 -2.0
1,332,273 + OKGIIK_06040 0.48 -1.8
1,332,273 + OKGIIK_06040 0.48 +0.3
1,332,274 - OKGIIK_06040 0.49 +0.1
1,332,274 - OKGIIK_06040 0.49 -0.1
1,332,274 - OKGIIK_06040 0.49 -0.8
1,332,361 + OKGIIK_06040 0.56 -1.6
1,332,361 + OKGIIK_06040 0.56 +0.5
1,332,361 + OKGIIK_06040 0.56 -0.4
1,332,362 - OKGIIK_06040 0.56 -0.2
1,332,362 - OKGIIK_06040 0.56 +0.1
1,332,379 + OKGIIK_06040 0.57 -0.2
1,332,380 - OKGIIK_06040 0.57 -1.0
1,332,400 + OKGIIK_06040 0.59 +1.3
1,332,401 - OKGIIK_06040 0.59 -0.1
1,332,443 + OKGIIK_06040 0.62 -0.7
1,332,480 + OKGIIK_06040 0.65 +0.6
1,332,480 + OKGIIK_06040 0.65 +0.4
1,332,480 + OKGIIK_06040 0.65 +0.5
1,332,481 - OKGIIK_06040 0.65 -0.5
1,332,481 - OKGIIK_06040 0.65 -0.4
1,332,481 - OKGIIK_06040 0.65 -0.1
1,332,540 + OKGIIK_06040 0.70 +1.3
1,332,541 + OKGIIK_06040 0.70 -0.9
1,332,542 - OKGIIK_06040 0.70 -0.7
1,332,542 - OKGIIK_06040 0.70 -0.4
1,332,664 + OKGIIK_06040 0.80 +0.1
1,332,664 + OKGIIK_06040 0.80 -0.1
1,332,664 + OKGIIK_06040 0.80 +0.1

Or see this region's nucleotide sequence