Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06157

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06155 and MPMX19_06156 are separated by 194 nucleotidesMPMX19_06156 and MPMX19_06157 are separated by 174 nucleotidesMPMX19_06157 and MPMX19_06158 are separated by 43 nucleotidesMPMX19_06158 and MPMX19_06159 are separated by 331 nucleotides MPMX19_06155: MPMX19_06155 - Quinoprotein glucose dehydrogenase, at 339,757 to 342,204 _06155 MPMX19_06156: MPMX19_06156 - hypothetical protein, at 342,399 to 342,920 _06156 MPMX19_06157: MPMX19_06157 - hypothetical protein, at 343,095 to 343,304 _06157 MPMX19_06158: MPMX19_06158 - hypothetical protein, at 343,348 to 343,647 _06158 MPMX19_06159: MPMX19_06159 - N-carbamoyl-L-amino acid hydrolase, at 343,979 to 345,241 _06159 Position (kb) 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 342.453 kb on + strand, within MPMX19_06156at 342.453 kb on + strand, within MPMX19_06156at 342.454 kb on - strand, within MPMX19_06156at 342.477 kb on + strand, within MPMX19_06156at 342.477 kb on + strand, within MPMX19_06156at 342.477 kb on + strand, within MPMX19_06156at 342.478 kb on - strand, within MPMX19_06156at 342.478 kb on - strand, within MPMX19_06156at 343.008 kb on + strandat 343.009 kb on - strandat 343.009 kb on - strandat 343.009 kb on - strandat 343.019 kb on + strandat 343.055 kb on + strandat 343.055 kb on + strandat 343.055 kb on + strandat 343.056 kb on - strandat 343.056 kb on - strandat 343.245 kb on + strand, within MPMX19_06157at 343.246 kb on - strand, within MPMX19_06157at 343.246 kb on - strand, within MPMX19_06157at 343.246 kb on - strand, within MPMX19_06157at 343.246 kb on - strand, within MPMX19_06157at 343.246 kb on - strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.278 kb on + strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.279 kb on - strand, within MPMX19_06157at 343.349 kb on + strandat 343.349 kb on + strandat 343.349 kb on + strandat 343.349 kb on + strandat 343.349 kb on + strandat 343.349 kb on + strandat 343.349 kb on + strandat 343.349 kb on + strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.350 kb on - strandat 343.691 kb on + strandat 343.692 kb on - strandat 343.692 kb on - strandat 343.692 kb on - strandat 343.704 kb on - strandat 343.739 kb on + strandat 343.739 kb on + strandat 343.740 kb on - strandat 343.740 kb on - strandat 343.771 kb on + strandat 343.771 kb on + strandat 343.779 kb on - strandat 343.916 kb on + strandat 343.916 kb on + strandat 343.916 kb on + strandat 343.916 kb on + strandat 343.916 kb on + strandat 343.916 kb on + strandat 343.916 kb on + strandat 343.917 kb on - strandat 343.917 kb on - strandat 343.917 kb on - strandat 343.917 kb on - strandat 343.917 kb on - strandat 343.917 kb on - strandat 343.917 kb on - strandat 343.918 kb on + strandat 343.918 kb on + strandat 343.919 kb on - strandat 343.919 kb on - strandat 343.919 kb on - strandat 343.919 kb on - strandat 343.919 kb on - strandat 344.087 kb on + strandat 344.087 kb on + strandat 344.087 kb on + strandat 344.087 kb on + strandat 344.087 kb on + strandat 344.087 kb on + strandat 344.088 kb on - strandat 344.088 kb on - strandat 344.088 kb on - strandat 344.088 kb on - strandat 344.088 kb on - strandat 344.088 kb on - strandat 344.088 kb on - strandat 344.192 kb on + strand, within MPMX19_06159at 344.193 kb on - strand, within MPMX19_06159at 344.267 kb on + strand, within MPMX19_06159at 344.267 kb on + strand, within MPMX19_06159at 344.268 kb on - strand, within MPMX19_06159at 344.268 kb on - strand, within MPMX19_06159at 344.268 kb on - strand, within MPMX19_06159at 344.268 kb on - strand, within MPMX19_06159

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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342,453 + MPMX19_06156 0.10 -0.4
342,453 + MPMX19_06156 0.10 +0.0
342,454 - MPMX19_06156 0.11 -1.0
342,477 + MPMX19_06156 0.15 -0.6
342,477 + MPMX19_06156 0.15 -0.2
342,477 + MPMX19_06156 0.15 -2.3
342,478 - MPMX19_06156 0.15 +0.1
342,478 - MPMX19_06156 0.15 +2.0
343,008 + -0.5
343,009 - -0.2
343,009 - -0.2
343,009 - +0.8
343,019 + -0.6
343,055 + -0.6
343,055 + +0.2
343,055 + -0.4
343,056 - +0.0
343,056 - -0.2
343,245 + MPMX19_06157 0.71 +0.4
343,246 - MPMX19_06157 0.72 -0.5
343,246 - MPMX19_06157 0.72 -1.4
343,246 - MPMX19_06157 0.72 +0.4
343,246 - MPMX19_06157 0.72 +0.1
343,246 - MPMX19_06157 0.72 -0.1
343,278 + MPMX19_06157 0.87 +0.5
343,278 + MPMX19_06157 0.87 +1.1
343,278 + MPMX19_06157 0.87 -2.2
343,278 + MPMX19_06157 0.87 -1.3
343,278 + MPMX19_06157 0.87 +0.1
343,278 + MPMX19_06157 0.87 -0.9
343,278 + MPMX19_06157 0.87 +0.7
343,278 + MPMX19_06157 0.87 +0.5
343,278 + MPMX19_06157 0.87 +0.1
343,278 + MPMX19_06157 0.87 +0.3
343,278 + MPMX19_06157 0.87 +0.6
343,278 + MPMX19_06157 0.87 +0.2
343,278 + MPMX19_06157 0.87 -0.9
343,278 + MPMX19_06157 0.87 -1.6
343,278 + MPMX19_06157 0.87 -0.1
343,278 + MPMX19_06157 0.87 -1.0
343,278 + MPMX19_06157 0.87 -1.8
343,278 + MPMX19_06157 0.87 +0.2
343,278 + MPMX19_06157 0.87 -1.1
343,278 + MPMX19_06157 0.87 -0.4
343,278 + MPMX19_06157 0.87 +1.0
343,278 + MPMX19_06157 0.87 -0.3
343,278 + MPMX19_06157 0.87 +1.4
343,278 + MPMX19_06157 0.87 -0.0
343,278 + MPMX19_06157 0.87 -1.0
343,278 + MPMX19_06157 0.87 +0.2
343,278 + MPMX19_06157 0.87 +0.3
343,278 + MPMX19_06157 0.87 +0.7
343,278 + MPMX19_06157 0.87 -0.9
343,278 + MPMX19_06157 0.87 +0.5
343,278 + MPMX19_06157 0.87 +0.2
343,278 + MPMX19_06157 0.87 +0.4
343,278 + MPMX19_06157 0.87 +0.6
343,278 + MPMX19_06157 0.87 +1.3
343,278 + MPMX19_06157 0.87 -0.4
343,278 + MPMX19_06157 0.87 -0.9
343,278 + MPMX19_06157 0.87 -0.6
343,278 + MPMX19_06157 0.87 -0.5
343,278 + MPMX19_06157 0.87 +0.6
343,278 + MPMX19_06157 0.87 -1.1
343,278 + MPMX19_06157 0.87 -0.4
343,278 + MPMX19_06157 0.87 +1.1
343,278 + MPMX19_06157 0.87 -2.1
343,278 + MPMX19_06157 0.87 +0.3
343,278 + MPMX19_06157 0.87 +0.3
343,278 + MPMX19_06157 0.87 +0.5
343,278 + MPMX19_06157 0.87 +1.0
343,279 - MPMX19_06157 0.88 -0.5
343,279 - MPMX19_06157 0.88 +0.0
343,279 - MPMX19_06157 0.88 -0.5
343,279 - MPMX19_06157 0.88 -1.1
343,279 - MPMX19_06157 0.88 +0.1
343,279 - MPMX19_06157 0.88 +0.5
343,279 - MPMX19_06157 0.88 -0.7
343,279 - MPMX19_06157 0.88 -0.2
343,279 - MPMX19_06157 0.88 +0.1
343,279 - MPMX19_06157 0.88 -0.2
343,279 - MPMX19_06157 0.88 -0.8
343,279 - MPMX19_06157 0.88 +0.5
343,279 - MPMX19_06157 0.88 -0.2
343,279 - MPMX19_06157 0.88 -1.3
343,279 - MPMX19_06157 0.88 +0.4
343,279 - MPMX19_06157 0.88 +0.3
343,279 - MPMX19_06157 0.88 +0.6
343,279 - MPMX19_06157 0.88 -0.9
343,279 - MPMX19_06157 0.88 -0.7
343,279 - MPMX19_06157 0.88 +0.4
343,279 - MPMX19_06157 0.88 -0.9
343,279 - MPMX19_06157 0.88 +0.1
343,279 - MPMX19_06157 0.88 -0.4
343,279 - MPMX19_06157 0.88 -0.3
343,279 - MPMX19_06157 0.88 -0.9
343,279 - MPMX19_06157 0.88 -0.3
343,279 - MPMX19_06157 0.88 -0.3
343,279 - MPMX19_06157 0.88 +0.4
343,279 - MPMX19_06157 0.88 +0.3
343,279 - MPMX19_06157 0.88 -1.9
343,279 - MPMX19_06157 0.88 -1.8
343,279 - MPMX19_06157 0.88 +0.3
343,279 - MPMX19_06157 0.88 +1.2
343,279 - MPMX19_06157 0.88 -2.0
343,279 - MPMX19_06157 0.88 -0.7
343,279 - MPMX19_06157 0.88 -0.1
343,279 - MPMX19_06157 0.88 -0.3
343,279 - MPMX19_06157 0.88 -0.6
343,279 - MPMX19_06157 0.88 -0.1
343,279 - MPMX19_06157 0.88 +0.5
343,279 - MPMX19_06157 0.88 -0.3
343,279 - MPMX19_06157 0.88 +0.1
343,279 - MPMX19_06157 0.88 -1.5
343,279 - MPMX19_06157 0.88 +0.0
343,279 - MPMX19_06157 0.88 -0.5
343,279 - MPMX19_06157 0.88 -0.7
343,279 - MPMX19_06157 0.88 -1.1
343,279 - MPMX19_06157 0.88 -1.0
343,349 + -0.5
343,349 + -0.9
343,349 + +0.9
343,349 + -1.2
343,349 + +0.3
343,349 + -0.9
343,349 + +1.1
343,349 + +0.8
343,350 - -0.2
343,350 - +0.1
343,350 - -0.5
343,350 - +0.3
343,350 - -0.5
343,350 - +0.5
343,350 - +1.0
343,350 - -0.1
343,350 - -0.6
343,350 - -2.1
343,350 - -2.3
343,691 + +0.4
343,692 - +0.8
343,692 - +0.5
343,692 - +0.7
343,704 - -0.7
343,739 + -0.5
343,739 + +0.4
343,740 - +0.3
343,740 - +0.5
343,771 + -0.5
343,771 + +0.1
343,779 - -0.5
343,916 + +1.2
343,916 + -0.5
343,916 + -1.5
343,916 + -0.3
343,916 + -1.3
343,916 + -1.1
343,916 + +0.1
343,917 - -0.2
343,917 - +0.5
343,917 - -0.4
343,917 - +0.5
343,917 - -0.6
343,917 - +0.2
343,917 - -1.5
343,918 + +0.2
343,918 + -0.5
343,919 - -0.4
343,919 - -0.5
343,919 - +0.3
343,919 - -2.8
343,919 - -1.3
344,087 + -1.6
344,087 + -0.6
344,087 + +0.7
344,087 + +0.7
344,087 + -0.1
344,087 + -1.0
344,088 - -0.3
344,088 - +0.3
344,088 - +1.7
344,088 - -1.8
344,088 - -0.8
344,088 - -0.2
344,088 - +0.4
344,192 + MPMX19_06159 0.17 -0.5
344,193 - MPMX19_06159 0.17 -0.8
344,267 + MPMX19_06159 0.23 -0.1
344,267 + MPMX19_06159 0.23 -1.0
344,268 - MPMX19_06159 0.23 -0.7
344,268 - MPMX19_06159 0.23 +0.8
344,268 - MPMX19_06159 0.23 -0.5
344,268 - MPMX19_06159 0.23 +0.1

Or see this region's nucleotide sequence