Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06049

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06048 and MPMX19_06049 are separated by 102 nucleotidesMPMX19_06049 and MPMX19_06050 are separated by 293 nucleotides MPMX19_06048: MPMX19_06048 - hypothetical protein, at 209,205 to 211,841 _06048 MPMX19_06049: MPMX19_06049 - hypothetical protein, at 211,944 to 212,135 _06049 MPMX19_06050: MPMX19_06050 - Phosphoenolpyruvate carboxylase, at 212,429 to 215,200 _06050 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1at 211.088 kb on + strand, within MPMX19_06048at 211.089 kb on - strand, within MPMX19_06048at 211.089 kb on - strand, within MPMX19_06048at 211.089 kb on - strand, within MPMX19_06048at 212.135 kb on + strandat 212.136 kb on - strandat 212.174 kb on - strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.328 kb on + strandat 212.329 kb on - strandat 212.329 kb on - strandat 212.329 kb on - strandat 212.329 kb on - strandat 212.562 kb on + strandat 212.563 kb on - strandat 212.563 kb on - strandat 212.563 kb on - strandat 212.563 kb on - strandat 212.724 kb on + strand, within MPMX19_06050at 212.724 kb on + strand, within MPMX19_06050at 212.725 kb on - strand, within MPMX19_06050at 212.725 kb on - strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.853 kb on + strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.854 kb on - strand, within MPMX19_06050at 212.881 kb on - strand, within MPMX19_06050at 213.033 kb on + strand, within MPMX19_06050at 213.033 kb on + strand, within MPMX19_06050at 213.033 kb on + strand, within MPMX19_06050at 213.034 kb on - strand, within MPMX19_06050at 213.034 kb on - strand, within MPMX19_06050at 213.057 kb on + strand, within MPMX19_06050at 213.057 kb on + strand, within MPMX19_06050at 213.058 kb on - strand, within MPMX19_06050at 213.058 kb on - strand, within MPMX19_06050at 213.058 kb on - strand, within MPMX19_06050at 213.058 kb on - strand, within MPMX19_06050at 213.072 kb on + strand, within MPMX19_06050at 213.072 kb on + strand, within MPMX19_06050at 213.073 kb on - strand, within MPMX19_06050at 213.073 kb on - strand, within MPMX19_06050at 213.073 kb on - strand, within MPMX19_06050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
211,088 + MPMX19_06048 0.71 -0.4
211,089 - MPMX19_06048 0.71 -0.2
211,089 - MPMX19_06048 0.71 +1.0
211,089 - MPMX19_06048 0.71 -1.4
212,135 + +0.2
212,136 - +0.7
212,174 - -0.2
212,328 + -1.6
212,328 + -2.0
212,328 + -0.3
212,328 + +0.2
212,328 + -1.5
212,328 + -0.8
212,328 + -0.3
212,329 - +0.4
212,329 - +1.4
212,329 - +0.1
212,329 - -0.6
212,562 + -0.2
212,563 - -1.8
212,563 - -1.1
212,563 - -0.6
212,563 - -2.1
212,724 + MPMX19_06050 0.11 -1.2
212,724 + MPMX19_06050 0.11 +1.0
212,725 - MPMX19_06050 0.11 -1.2
212,725 - MPMX19_06050 0.11 -2.8
212,853 + MPMX19_06050 0.15 -0.3
212,853 + MPMX19_06050 0.15 -0.5
212,853 + MPMX19_06050 0.15 +0.4
212,853 + MPMX19_06050 0.15 -2.6
212,853 + MPMX19_06050 0.15 -1.2
212,853 + MPMX19_06050 0.15 -1.2
212,853 + MPMX19_06050 0.15 +0.1
212,853 + MPMX19_06050 0.15 -1.5
212,854 - MPMX19_06050 0.15 -1.5
212,854 - MPMX19_06050 0.15 -3.0
212,854 - MPMX19_06050 0.15 -0.9
212,854 - MPMX19_06050 0.15 -2.2
212,854 - MPMX19_06050 0.15 -1.7
212,854 - MPMX19_06050 0.15 -2.6
212,854 - MPMX19_06050 0.15 -1.6
212,854 - MPMX19_06050 0.15 -1.6
212,854 - MPMX19_06050 0.15 -1.5
212,881 - MPMX19_06050 0.16 -1.1
213,033 + MPMX19_06050 0.22 -1.6
213,033 + MPMX19_06050 0.22 -0.3
213,033 + MPMX19_06050 0.22 -1.6
213,034 - MPMX19_06050 0.22 +0.4
213,034 - MPMX19_06050 0.22 -1.2
213,057 + MPMX19_06050 0.23 -1.6
213,057 + MPMX19_06050 0.23 -0.6
213,058 - MPMX19_06050 0.23 -3.0
213,058 - MPMX19_06050 0.23 -1.1
213,058 - MPMX19_06050 0.23 -2.0
213,058 - MPMX19_06050 0.23 -1.1
213,072 + MPMX19_06050 0.23 +0.4
213,072 + MPMX19_06050 0.23 +0.5
213,073 - MPMX19_06050 0.23 -1.1
213,073 - MPMX19_06050 0.23 -3.4
213,073 - MPMX19_06050 0.23 -1.8

Or see this region's nucleotide sequence