Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05995

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05994 and MPMX19_05995 are separated by 487 nucleotidesMPMX19_05995 and MPMX19_05996 are separated by 114 nucleotidesMPMX19_05996 and MPMX19_05997 are separated by 55 nucleotides MPMX19_05994: MPMX19_05994 - hypothetical protein, at 147,637 to 148,494 _05994 MPMX19_05995: MPMX19_05995 - hypothetical protein, at 148,982 to 150,598 _05995 MPMX19_05996: MPMX19_05996 - Dodecaprenyl-phosphate galacturonate synthase, at 150,713 to 151,474 _05996 MPMX19_05997: MPMX19_05997 - hypothetical protein, at 151,530 to 151,865 _05997 Position (kb) 148 149 150 151Strain fitness (log2 ratio) -2 -1 0 1 2 3at 148.643 kb on - strandat 148.643 kb on - strandat 148.673 kb on - strandat 148.673 kb on - strandat 148.673 kb on - strandat 149.009 kb on + strandat 149.009 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.141 kb on + strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.142 kb on - strandat 149.720 kb on + strand, within MPMX19_05995at 149.720 kb on + strand, within MPMX19_05995at 149.720 kb on + strand, within MPMX19_05995at 149.720 kb on + strand, within MPMX19_05995at 149.720 kb on + strand, within MPMX19_05995at 149.721 kb on - strand, within MPMX19_05995at 149.721 kb on - strand, within MPMX19_05995at 149.721 kb on - strand, within MPMX19_05995at 149.721 kb on - strand, within MPMX19_05995at 149.721 kb on - strand, within MPMX19_05995at 149.721 kb on - strand, within MPMX19_05995at 149.729 kb on + strand, within MPMX19_05995at 149.729 kb on + strand, within MPMX19_05995at 149.729 kb on + strand, within MPMX19_05995at 149.729 kb on + strand, within MPMX19_05995at 149.729 kb on + strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.730 kb on - strand, within MPMX19_05995at 149.780 kb on + strand, within MPMX19_05995at 149.780 kb on + strand, within MPMX19_05995at 149.780 kb on + strand, within MPMX19_05995at 149.780 kb on + strand, within MPMX19_05995at 149.781 kb on - strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.822 kb on + strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 149.823 kb on - strand, within MPMX19_05995at 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.551 kb on + strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.552 kb on - strandat 150.586 kb on + strandat 150.596 kb on + strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.597 kb on - strandat 150.738 kb on - strandat 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.328 kb on + strand, within MPMX19_05996at 151.329 kb on - strand, within MPMX19_05996at 151.329 kb on - strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.373 kb on + strand, within MPMX19_05996at 151.424 kb on + strandat 151.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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148,643 - -0.2
148,643 - -1.9
148,673 - +0.5
148,673 - -0.5
148,673 - -1.2
149,009 + -0.5
149,009 + -0.1
149,141 + -0.7
149,141 + -0.9
149,141 + +1.1
149,141 + -1.0
149,141 + +0.1
149,141 + -0.8
149,141 + -0.0
149,141 + -0.3
149,141 + -1.3
149,141 + -1.1
149,141 + +0.0
149,141 + +0.5
149,141 + -0.5
149,141 + -1.3
149,141 + -1.0
149,141 + +0.5
149,142 - -0.1
149,142 - -1.9
149,142 - -0.2
149,142 - -0.3
149,142 - +1.4
149,142 - +0.1
149,142 - +0.1
149,142 - +0.8
149,142 - -0.4
149,142 - -1.5
149,142 - -1.8
149,142 - -0.5
149,142 - +0.9
149,720 + MPMX19_05995 0.46 +1.1
149,720 + MPMX19_05995 0.46 +0.2
149,720 + MPMX19_05995 0.46 +0.3
149,720 + MPMX19_05995 0.46 +0.0
149,720 + MPMX19_05995 0.46 +0.2
149,721 - MPMX19_05995 0.46 +0.5
149,721 - MPMX19_05995 0.46 -0.7
149,721 - MPMX19_05995 0.46 -0.6
149,721 - MPMX19_05995 0.46 -0.3
149,721 - MPMX19_05995 0.46 +0.1
149,721 - MPMX19_05995 0.46 -0.3
149,729 + MPMX19_05995 0.46 -1.5
149,729 + MPMX19_05995 0.46 -1.3
149,729 + MPMX19_05995 0.46 -1.1
149,729 + MPMX19_05995 0.46 +0.5
149,729 + MPMX19_05995 0.46 -0.7
149,730 - MPMX19_05995 0.46 -1.7
149,730 - MPMX19_05995 0.46 -0.0
149,730 - MPMX19_05995 0.46 +0.4
149,730 - MPMX19_05995 0.46 -0.9
149,730 - MPMX19_05995 0.46 +0.1
149,730 - MPMX19_05995 0.46 +0.3
149,730 - MPMX19_05995 0.46 -2.1
149,730 - MPMX19_05995 0.46 -2.0
149,730 - MPMX19_05995 0.46 +0.1
149,730 - MPMX19_05995 0.46 +0.1
149,730 - MPMX19_05995 0.46 +0.1
149,780 + MPMX19_05995 0.49 -0.1
149,780 + MPMX19_05995 0.49 -1.1
149,780 + MPMX19_05995 0.49 -0.3
149,780 + MPMX19_05995 0.49 -0.3
149,781 - MPMX19_05995 0.49 -1.0
149,822 + MPMX19_05995 0.52 -0.7
149,822 + MPMX19_05995 0.52 +0.1
149,822 + MPMX19_05995 0.52 -1.6
149,822 + MPMX19_05995 0.52 +0.4
149,822 + MPMX19_05995 0.52 +0.7
149,822 + MPMX19_05995 0.52 +1.7
149,822 + MPMX19_05995 0.52 -1.4
149,822 + MPMX19_05995 0.52 -0.5
149,822 + MPMX19_05995 0.52 -0.0
149,822 + MPMX19_05995 0.52 -0.1
149,822 + MPMX19_05995 0.52 +0.5
149,822 + MPMX19_05995 0.52 -1.1
149,823 - MPMX19_05995 0.52 -1.0
149,823 - MPMX19_05995 0.52 -2.2
149,823 - MPMX19_05995 0.52 +1.3
149,823 - MPMX19_05995 0.52 +0.7
149,823 - MPMX19_05995 0.52 -0.5
149,823 - MPMX19_05995 0.52 -0.2
149,823 - MPMX19_05995 0.52 +0.1
149,823 - MPMX19_05995 0.52 -1.5
149,823 - MPMX19_05995 0.52 -2.0
149,823 - MPMX19_05995 0.52 -0.4
149,823 - MPMX19_05995 0.52 -0.8
149,823 - MPMX19_05995 0.52 -0.5
150,551 + -0.5
150,551 + -1.7
150,551 + +0.2
150,551 + -0.3
150,551 + -1.2
150,551 + -0.3
150,551 + +0.0
150,551 + -1.3
150,551 + -1.3
150,551 + +1.0
150,551 + +0.7
150,551 + +0.5
150,551 + +0.4
150,552 - -0.8
150,552 - +0.5
150,552 - +0.1
150,552 - +0.5
150,552 - +0.2
150,552 - -1.3
150,552 - +0.5
150,552 - +0.1
150,552 - -0.3
150,552 - -1.3
150,552 - +0.8
150,552 - -0.1
150,552 - -2.4
150,552 - -1.3
150,586 + -0.9
150,596 + -0.4
150,597 - -1.0
150,597 - -0.1
150,597 - +0.4
150,597 - +0.5
150,597 - -0.9
150,597 - -0.0
150,738 - -0.2
151,328 + MPMX19_05996 0.81 -0.9
151,328 + MPMX19_05996 0.81 -0.2
151,328 + MPMX19_05996 0.81 -0.5
151,328 + MPMX19_05996 0.81 -0.3
151,328 + MPMX19_05996 0.81 -0.9
151,328 + MPMX19_05996 0.81 -0.1
151,328 + MPMX19_05996 0.81 -0.1
151,328 + MPMX19_05996 0.81 +1.0
151,328 + MPMX19_05996 0.81 -0.6
151,328 + MPMX19_05996 0.81 +1.9
151,328 + MPMX19_05996 0.81 +0.3
151,328 + MPMX19_05996 0.81 -0.3
151,328 + MPMX19_05996 0.81 +2.4
151,329 - MPMX19_05996 0.81 +3.0
151,329 - MPMX19_05996 0.81 -1.6
151,373 + MPMX19_05996 0.87 +0.1
151,373 + MPMX19_05996 0.87 -1.4
151,373 + MPMX19_05996 0.87 +1.0
151,424 + -1.0
151,424 + +0.1

Or see this region's nucleotide sequence