Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05653

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05651 and MPMX19_05652 are separated by 244 nucleotidesMPMX19_05652 and MPMX19_05653 are separated by 88 nucleotidesMPMX19_05653 and MPMX19_05654 are separated by 74 nucleotidesMPMX19_05654 and MPMX19_05655 are separated by 107 nucleotides MPMX19_05651: MPMX19_05651 - hypothetical protein, at 369,322 to 369,963 _05651 MPMX19_05652: MPMX19_05652 - hypothetical protein, at 370,208 to 370,822 _05652 MPMX19_05653: MPMX19_05653 - Leucine-responsive regulatory protein, at 370,911 to 371,390 _05653 MPMX19_05654: MPMX19_05654 - hypothetical protein, at 371,465 to 372,154 _05654 MPMX19_05655: MPMX19_05655 - hypothetical protein, at 372,262 to 372,948 _05655 Position (kb) 370 371 372Strain fitness (log2 ratio) -3 -2 -1 0 1at 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.940 kb on + strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 369.941 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.048 kb on - strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.107 kb on + strandat 370.108 kb on - strandat 370.108 kb on - strandat 370.108 kb on - strandat 370.182 kb on + strandat 370.182 kb on + strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.183 kb on - strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.202 kb on + strandat 370.203 kb on - strandat 370.538 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.556 kb on + strand, within MPMX19_05652at 370.557 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 370.596 kb on - strand, within MPMX19_05652at 371.029 kb on + strand, within MPMX19_05653at 371.029 kb on + strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.030 kb on - strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.065 kb on + strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.066 kb on - strand, within MPMX19_05653at 371.227 kb on + strand, within MPMX19_05653at 371.227 kb on + strand, within MPMX19_05653at 371.228 kb on - strand, within MPMX19_05653at 371.432 kb on + strandat 371.557 kb on + strand, within MPMX19_05654at 371.557 kb on + strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.558 kb on - strand, within MPMX19_05654at 371.576 kb on + strand, within MPMX19_05654at 371.576 kb on + strand, within MPMX19_05654at 371.576 kb on + strand, within MPMX19_05654at 371.577 kb on - strand, within MPMX19_05654at 371.577 kb on - strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.963 kb on + strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 371.964 kb on - strand, within MPMX19_05654at 372.014 kb on + strand, within MPMX19_05654at 372.014 kb on + strand, within MPMX19_05654at 372.014 kb on + strand, within MPMX19_05654at 372.015 kb on - strand, within MPMX19_05654at 372.015 kb on - strand, within MPMX19_05654at 372.015 kb on - strand, within MPMX19_05654at 372.042 kb on + strand, within MPMX19_05654at 372.042 kb on + strand, within MPMX19_05654at 372.042 kb on + strand, within MPMX19_05654at 372.043 kb on - strand, within MPMX19_05654at 372.043 kb on - strand, within MPMX19_05654at 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.098 kb on + strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.099 kb on - strandat 372.104 kb on + strandat 372.104 kb on + strandat 372.104 kb on + strandat 372.104 kb on + strandat 372.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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369,940 + -1.0
369,940 + -1.1
369,940 + -0.1
369,940 + -0.4
369,940 + -0.1
369,940 + +0.9
369,940 + +0.2
369,941 - -1.4
369,941 - -2.3
369,941 - -1.2
369,941 - +0.3
369,941 - -1.1
369,941 - -0.1
370,048 - -1.2
370,048 - -0.0
370,048 - -0.1
370,048 - +0.1
370,107 + +0.6
370,107 + -0.2
370,107 + +0.1
370,108 - +1.3
370,108 - -0.0
370,108 - +0.1
370,182 + +0.1
370,182 + +0.6
370,183 - -0.8
370,183 - -0.6
370,183 - +0.6
370,183 - +0.1
370,202 + -1.5
370,202 + +0.1
370,202 + +0.3
370,202 + -0.7
370,203 - -2.1
370,538 + MPMX19_05652 0.54 -0.9
370,556 + MPMX19_05652 0.57 -3.0
370,556 + MPMX19_05652 0.57 -0.7
370,556 + MPMX19_05652 0.57 -0.9
370,556 + MPMX19_05652 0.57 -0.4
370,557 - MPMX19_05652 0.57 -0.5
370,596 - MPMX19_05652 0.63 +0.2
370,596 - MPMX19_05652 0.63 +0.6
370,596 - MPMX19_05652 0.63 -1.4
370,596 - MPMX19_05652 0.63 -1.9
371,029 + MPMX19_05653 0.25 +0.1
371,029 + MPMX19_05653 0.25 -0.1
371,030 - MPMX19_05653 0.25 -2.1
371,030 - MPMX19_05653 0.25 -1.9
371,030 - MPMX19_05653 0.25 -0.1
371,030 - MPMX19_05653 0.25 -0.2
371,030 - MPMX19_05653 0.25 -0.3
371,065 + MPMX19_05653 0.32 -1.9
371,065 + MPMX19_05653 0.32 -1.1
371,065 + MPMX19_05653 0.32 -0.0
371,065 + MPMX19_05653 0.32 -2.1
371,065 + MPMX19_05653 0.32 -0.9
371,065 + MPMX19_05653 0.32 -1.4
371,066 - MPMX19_05653 0.32 +0.1
371,066 - MPMX19_05653 0.32 -1.9
371,066 - MPMX19_05653 0.32 -1.4
371,066 - MPMX19_05653 0.32 -0.4
371,227 + MPMX19_05653 0.66 -1.2
371,227 + MPMX19_05653 0.66 -0.9
371,228 - MPMX19_05653 0.66 +0.1
371,432 + -0.7
371,557 + MPMX19_05654 0.13 +0.1
371,557 + MPMX19_05654 0.13 +0.3
371,558 - MPMX19_05654 0.13 -1.2
371,558 - MPMX19_05654 0.13 -0.0
371,558 - MPMX19_05654 0.13 -0.6
371,558 - MPMX19_05654 0.13 -0.4
371,558 - MPMX19_05654 0.13 -0.6
371,576 + MPMX19_05654 0.16 +0.5
371,576 + MPMX19_05654 0.16 -1.1
371,576 + MPMX19_05654 0.16 -0.2
371,577 - MPMX19_05654 0.16 -1.1
371,577 - MPMX19_05654 0.16 -1.2
371,963 + MPMX19_05654 0.72 -0.0
371,963 + MPMX19_05654 0.72 -1.3
371,963 + MPMX19_05654 0.72 +0.1
371,963 + MPMX19_05654 0.72 -1.1
371,963 + MPMX19_05654 0.72 +0.4
371,963 + MPMX19_05654 0.72 -0.3
371,963 + MPMX19_05654 0.72 -1.2
371,963 + MPMX19_05654 0.72 -0.7
371,963 + MPMX19_05654 0.72 -1.5
371,963 + MPMX19_05654 0.72 -0.9
371,963 + MPMX19_05654 0.72 -0.9
371,964 - MPMX19_05654 0.72 +0.3
371,964 - MPMX19_05654 0.72 +0.1
371,964 - MPMX19_05654 0.72 -0.6
371,964 - MPMX19_05654 0.72 -0.1
371,964 - MPMX19_05654 0.72 -0.5
371,964 - MPMX19_05654 0.72 +0.3
371,964 - MPMX19_05654 0.72 -1.4
371,964 - MPMX19_05654 0.72 -0.2
371,964 - MPMX19_05654 0.72 +0.2
371,964 - MPMX19_05654 0.72 +0.1
371,964 - MPMX19_05654 0.72 -0.4
372,014 + MPMX19_05654 0.80 +0.3
372,014 + MPMX19_05654 0.80 +0.1
372,014 + MPMX19_05654 0.80 -0.1
372,015 - MPMX19_05654 0.80 -0.4
372,015 - MPMX19_05654 0.80 -0.2
372,015 - MPMX19_05654 0.80 -0.1
372,042 + MPMX19_05654 0.84 +1.5
372,042 + MPMX19_05654 0.84 -0.2
372,042 + MPMX19_05654 0.84 -0.1
372,043 - MPMX19_05654 0.84 -0.5
372,043 - MPMX19_05654 0.84 -0.1
372,098 + -1.0
372,098 + -0.7
372,098 + -0.4
372,098 + -0.2
372,098 + -1.1
372,098 + -1.5
372,098 + -1.0
372,098 + -1.8
372,098 + -1.5
372,098 + -0.3
372,099 - +0.5
372,099 - -2.3
372,099 - +0.5
372,099 - -2.7
372,099 - -0.7
372,099 - +0.3
372,099 - +0.1
372,099 - -1.2
372,099 - -1.0
372,099 - -0.8
372,099 - -0.4
372,099 - -0.4
372,104 + -0.5
372,104 + +0.1
372,104 + -1.4
372,104 + -0.4
372,105 - -0.1

Or see this region's nucleotide sequence