Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05341 and MPMX19_05342 are separated by 79 nucleotides MPMX19_05342 and MPMX19_05343 are separated by 147 nucleotides MPMX19_05343 and MPMX19_05344 are separated by 23 nucleotides MPMX19_05344 and MPMX19_05345 are separated by 10 nucleotides
MPMX19_05341: MPMX19_05341 - hypothetical protein, at 13,975 to 14,751
_05341
MPMX19_05342: MPMX19_05342 - hypothetical protein, at 14,831 to 15,103
_05342
MPMX19_05343: MPMX19_05343 - hypothetical protein, at 15,251 to 16,255
_05343
MPMX19_05344: MPMX19_05344 - HTH-type transcriptional regulator YofA, at 16,279 to 17,199
_05344
MPMX19_05345: MPMX19_05345 - hypothetical protein, at 17,210 to 17,923
_05345
Position (kb)
15
16
17 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 14.259 kb on + strand, within MPMX19_05341 at 14.259 kb on + strand, within MPMX19_05341 at 14.260 kb on - strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.320 kb on + strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.321 kb on - strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.596 kb on + strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.597 kb on - strand, within MPMX19_05341 at 14.671 kb on + strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.672 kb on - strand, within MPMX19_05341 at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.709 kb on + strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.710 kb on - strand at 14.749 kb on + strand at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.909 kb on + strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.910 kb on - strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.942 kb on + strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 14.943 kb on - strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.053 kb on + strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.054 kb on - strand, within MPMX19_05342 at 15.180 kb on - strand at 15.362 kb on + strand, within MPMX19_05343 at 15.362 kb on + strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.363 kb on - strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.545 kb on + strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.546 kb on - strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.935 kb on + strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 15.936 kb on - strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.106 kb on + strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.107 kb on - strand, within MPMX19_05343 at 16.213 kb on + strand at 16.213 kb on + strand at 16.214 kb on - strand at 16.223 kb on + strand at 16.223 kb on + strand at 16.223 kb on + strand at 16.223 kb on + strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.224 kb on - strand at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.528 kb on + strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.529 kb on - strand, within MPMX19_05344 at 16.744 kb on + strand, within MPMX19_05344 at 16.745 kb on - strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.951 kb on + strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 16.952 kb on - strand, within MPMX19_05344 at 17.102 kb on - strand, within MPMX19_05344 at 17.102 kb on - strand, within MPMX19_05344 at 17.102 kb on - strand, within MPMX19_05344
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 14,259 + MPMX19_05341 0.37 +3.2 14,259 + MPMX19_05341 0.37 -0.1 14,260 - MPMX19_05341 0.37 -0.5 14,320 + MPMX19_05341 0.44 +0.2 14,320 + MPMX19_05341 0.44 +0.1 14,320 + MPMX19_05341 0.44 +0.1 14,320 + MPMX19_05341 0.44 -0.2 14,320 + MPMX19_05341 0.44 -0.1 14,320 + MPMX19_05341 0.44 +0.4 14,320 + MPMX19_05341 0.44 -0.5 14,320 + MPMX19_05341 0.44 -0.6 14,320 + MPMX19_05341 0.44 +0.6 14,321 - MPMX19_05341 0.45 -0.6 14,321 - MPMX19_05341 0.45 +0.1 14,321 - MPMX19_05341 0.45 -0.4 14,321 - MPMX19_05341 0.45 +0.2 14,321 - MPMX19_05341 0.45 -0.5 14,321 - MPMX19_05341 0.45 -0.2 14,321 - MPMX19_05341 0.45 -0.7 14,321 - MPMX19_05341 0.45 -1.0 14,321 - MPMX19_05341 0.45 -0.0 14,321 - MPMX19_05341 0.45 -0.4 14,596 + MPMX19_05341 0.80 -0.8 14,596 + MPMX19_05341 0.80 -0.9 14,596 + MPMX19_05341 0.80 -1.3 14,596 + MPMX19_05341 0.80 +0.5 14,596 + MPMX19_05341 0.80 +0.7 14,597 - MPMX19_05341 0.80 +0.4 14,597 - MPMX19_05341 0.80 -1.7 14,597 - MPMX19_05341 0.80 -0.5 14,597 - MPMX19_05341 0.80 -0.9 14,597 - MPMX19_05341 0.80 +0.2 14,597 - MPMX19_05341 0.80 -0.4 14,671 + MPMX19_05341 0.90 -0.2 14,672 - MPMX19_05341 0.90 -1.8 14,672 - MPMX19_05341 0.90 -0.4 14,672 - MPMX19_05341 0.90 +0.0 14,709 + -1.8 14,709 + -0.5 14,709 + -2.2 14,709 + -0.8 14,709 + -0.5 14,709 + -1.2 14,709 + -0.4 14,709 + -0.4 14,709 + -0.7 14,709 + +1.4 14,709 + -0.1 14,710 - +0.2 14,710 - -0.1 14,710 - -2.1 14,710 - -0.4 14,710 - +0.4 14,710 - -1.7 14,710 - +0.2 14,710 - +0.1 14,710 - -0.8 14,710 - +0.5 14,749 + +0.2 14,909 + MPMX19_05342 0.29 -0.2 14,909 + MPMX19_05342 0.29 +0.8 14,909 + MPMX19_05342 0.29 -0.2 14,909 + MPMX19_05342 0.29 +0.1 14,910 - MPMX19_05342 0.29 -0.9 14,910 - MPMX19_05342 0.29 +0.3 14,942 + MPMX19_05342 0.41 +0.2 14,942 + MPMX19_05342 0.41 -0.5 14,942 + MPMX19_05342 0.41 +0.4 14,943 - MPMX19_05342 0.41 -0.8 14,943 - MPMX19_05342 0.41 +1.2 14,943 - MPMX19_05342 0.41 -0.5 15,053 + MPMX19_05342 0.81 -1.2 15,053 + MPMX19_05342 0.81 -2.1 15,053 + MPMX19_05342 0.81 +2.2 15,053 + MPMX19_05342 0.81 +0.9 15,053 + MPMX19_05342 0.81 +1.2 15,053 + MPMX19_05342 0.81 -0.7 15,053 + MPMX19_05342 0.81 -0.4 15,054 - MPMX19_05342 0.82 -1.9 15,054 - MPMX19_05342 0.82 -0.2 15,054 - MPMX19_05342 0.82 +0.8 15,180 - -1.2 15,362 + MPMX19_05343 0.11 -0.3 15,362 + MPMX19_05343 0.11 -0.6 15,363 - MPMX19_05343 0.11 +0.2 15,363 - MPMX19_05343 0.11 +1.2 15,363 - MPMX19_05343 0.11 +1.1 15,545 + MPMX19_05343 0.29 +0.8 15,545 + MPMX19_05343 0.29 -1.2 15,545 + MPMX19_05343 0.29 +0.5 15,546 - MPMX19_05343 0.29 -0.8 15,546 - MPMX19_05343 0.29 -0.0 15,546 - MPMX19_05343 0.29 -0.9 15,935 + MPMX19_05343 0.68 +0.8 15,935 + MPMX19_05343 0.68 -0.7 15,935 + MPMX19_05343 0.68 +1.5 15,935 + MPMX19_05343 0.68 +0.2 15,935 + MPMX19_05343 0.68 +1.0 15,936 - MPMX19_05343 0.68 -0.0 15,936 - MPMX19_05343 0.68 -0.2 15,936 - MPMX19_05343 0.68 -0.9 15,936 - MPMX19_05343 0.68 -0.5 16,106 + MPMX19_05343 0.85 -1.7 16,106 + MPMX19_05343 0.85 +0.1 16,106 + MPMX19_05343 0.85 +0.5 16,106 + MPMX19_05343 0.85 +0.1 16,106 + MPMX19_05343 0.85 +0.3 16,106 + MPMX19_05343 0.85 -0.9 16,106 + MPMX19_05343 0.85 -0.2 16,106 + MPMX19_05343 0.85 +0.1 16,106 + MPMX19_05343 0.85 +0.6 16,106 + MPMX19_05343 0.85 +0.2 16,106 + MPMX19_05343 0.85 +0.0 16,107 - MPMX19_05343 0.85 -0.5 16,107 - MPMX19_05343 0.85 +0.3 16,107 - MPMX19_05343 0.85 -0.7 16,107 - MPMX19_05343 0.85 -0.9 16,107 - MPMX19_05343 0.85 +0.2 16,107 - MPMX19_05343 0.85 -0.7 16,107 - MPMX19_05343 0.85 -1.7 16,107 - MPMX19_05343 0.85 -0.1 16,107 - MPMX19_05343 0.85 +0.6 16,107 - MPMX19_05343 0.85 -0.3 16,107 - MPMX19_05343 0.85 -0.4 16,107 - MPMX19_05343 0.85 +0.8 16,107 - MPMX19_05343 0.85 -0.4 16,107 - MPMX19_05343 0.85 -0.5 16,107 - MPMX19_05343 0.85 -0.4 16,107 - MPMX19_05343 0.85 -0.4 16,107 - MPMX19_05343 0.85 -0.2 16,107 - MPMX19_05343 0.85 +0.1 16,213 + -1.0 16,213 + +0.5 16,214 - -0.5 16,223 + -0.4 16,223 + -1.2 16,223 + +0.3 16,223 + +0.1 16,224 - -0.5 16,224 - +0.6 16,224 - -2.2 16,224 - -0.2 16,224 - +0.1 16,528 + MPMX19_05344 0.27 -0.5 16,528 + MPMX19_05344 0.27 -0.6 16,528 + MPMX19_05344 0.27 -0.2 16,528 + MPMX19_05344 0.27 -0.4 16,528 + MPMX19_05344 0.27 +0.7 16,528 + MPMX19_05344 0.27 +0.2 16,528 + MPMX19_05344 0.27 -1.2 16,529 - MPMX19_05344 0.27 +0.6 16,529 - MPMX19_05344 0.27 +0.5 16,529 - MPMX19_05344 0.27 -0.2 16,529 - MPMX19_05344 0.27 +0.0 16,529 - MPMX19_05344 0.27 -0.9 16,744 + MPMX19_05344 0.50 -0.5 16,745 - MPMX19_05344 0.51 +1.1 16,951 + MPMX19_05344 0.73 -1.2 16,951 + MPMX19_05344 0.73 +1.2 16,951 + MPMX19_05344 0.73 -0.1 16,951 + MPMX19_05344 0.73 -1.7 16,951 + MPMX19_05344 0.73 -0.7 16,951 + MPMX19_05344 0.73 -0.2 16,951 + MPMX19_05344 0.73 +0.3 16,951 + MPMX19_05344 0.73 +0.9 16,952 - MPMX19_05344 0.73 +0.1 16,952 - MPMX19_05344 0.73 -1.7 16,952 - MPMX19_05344 0.73 -0.5 16,952 - MPMX19_05344 0.73 -0.4 16,952 - MPMX19_05344 0.73 +0.1 16,952 - MPMX19_05344 0.73 +0.6 16,952 - MPMX19_05344 0.73 -1.7 16,952 - MPMX19_05344 0.73 +0.1 16,952 - MPMX19_05344 0.73 -1.0 16,952 - MPMX19_05344 0.73 -0.4 16,952 - MPMX19_05344 0.73 -0.9 16,952 - MPMX19_05344 0.73 -0.2 16,952 - MPMX19_05344 0.73 +0.2 16,952 - MPMX19_05344 0.73 -0.5 17,102 - MPMX19_05344 0.89 -0.7 17,102 - MPMX19_05344 0.89 -0.1 17,102 - MPMX19_05344 0.89 -0.4
Or see this region's nucleotide sequence