Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05343

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05341 and MPMX19_05342 are separated by 79 nucleotidesMPMX19_05342 and MPMX19_05343 are separated by 147 nucleotidesMPMX19_05343 and MPMX19_05344 are separated by 23 nucleotidesMPMX19_05344 and MPMX19_05345 are separated by 10 nucleotides MPMX19_05341: MPMX19_05341 - hypothetical protein, at 13,975 to 14,751 _05341 MPMX19_05342: MPMX19_05342 - hypothetical protein, at 14,831 to 15,103 _05342 MPMX19_05343: MPMX19_05343 - hypothetical protein, at 15,251 to 16,255 _05343 MPMX19_05344: MPMX19_05344 - HTH-type transcriptional regulator YofA, at 16,279 to 17,199 _05344 MPMX19_05345: MPMX19_05345 - hypothetical protein, at 17,210 to 17,923 _05345 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1 2 3at 14.259 kb on + strand, within MPMX19_05341at 14.259 kb on + strand, within MPMX19_05341at 14.260 kb on - strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.320 kb on + strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.321 kb on - strand, within MPMX19_05341at 14.596 kb on + strand, within MPMX19_05341at 14.596 kb on + strand, within MPMX19_05341at 14.596 kb on + strand, within MPMX19_05341at 14.596 kb on + strand, within MPMX19_05341at 14.596 kb on + strand, within MPMX19_05341at 14.597 kb on - strand, within MPMX19_05341at 14.597 kb on - strand, within MPMX19_05341at 14.597 kb on - strand, within MPMX19_05341at 14.597 kb on - strand, within MPMX19_05341at 14.597 kb on - strand, within MPMX19_05341at 14.597 kb on - strand, within MPMX19_05341at 14.671 kb on + strand, within MPMX19_05341at 14.672 kb on - strand, within MPMX19_05341at 14.672 kb on - strand, within MPMX19_05341at 14.672 kb on - strand, within MPMX19_05341at 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.709 kb on + strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.710 kb on - strandat 14.749 kb on + strandat 14.909 kb on + strand, within MPMX19_05342at 14.909 kb on + strand, within MPMX19_05342at 14.909 kb on + strand, within MPMX19_05342at 14.909 kb on + strand, within MPMX19_05342at 14.910 kb on - strand, within MPMX19_05342at 14.910 kb on - strand, within MPMX19_05342at 14.942 kb on + strand, within MPMX19_05342at 14.942 kb on + strand, within MPMX19_05342at 14.942 kb on + strand, within MPMX19_05342at 14.943 kb on - strand, within MPMX19_05342at 14.943 kb on - strand, within MPMX19_05342at 14.943 kb on - strand, within MPMX19_05342at 15.053 kb on + strand, within MPMX19_05342at 15.053 kb on + strand, within MPMX19_05342at 15.053 kb on + strand, within MPMX19_05342at 15.053 kb on + strand, within MPMX19_05342at 15.053 kb on + strand, within MPMX19_05342at 15.053 kb on + strand, within MPMX19_05342at 15.053 kb on + strand, within MPMX19_05342at 15.054 kb on - strand, within MPMX19_05342at 15.054 kb on - strand, within MPMX19_05342at 15.054 kb on - strand, within MPMX19_05342at 15.180 kb on - strandat 15.362 kb on + strand, within MPMX19_05343at 15.362 kb on + strand, within MPMX19_05343at 15.363 kb on - strand, within MPMX19_05343at 15.363 kb on - strand, within MPMX19_05343at 15.363 kb on - strand, within MPMX19_05343at 15.545 kb on + strand, within MPMX19_05343at 15.545 kb on + strand, within MPMX19_05343at 15.545 kb on + strand, within MPMX19_05343at 15.546 kb on - strand, within MPMX19_05343at 15.546 kb on - strand, within MPMX19_05343at 15.546 kb on - strand, within MPMX19_05343at 15.935 kb on + strand, within MPMX19_05343at 15.935 kb on + strand, within MPMX19_05343at 15.935 kb on + strand, within MPMX19_05343at 15.935 kb on + strand, within MPMX19_05343at 15.935 kb on + strand, within MPMX19_05343at 15.936 kb on - strand, within MPMX19_05343at 15.936 kb on - strand, within MPMX19_05343at 15.936 kb on - strand, within MPMX19_05343at 15.936 kb on - strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.106 kb on + strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.107 kb on - strand, within MPMX19_05343at 16.213 kb on + strandat 16.213 kb on + strandat 16.214 kb on - strandat 16.223 kb on + strandat 16.223 kb on + strandat 16.223 kb on + strandat 16.223 kb on + strandat 16.224 kb on - strandat 16.224 kb on - strandat 16.224 kb on - strandat 16.224 kb on - strandat 16.224 kb on - strandat 16.528 kb on + strand, within MPMX19_05344at 16.528 kb on + strand, within MPMX19_05344at 16.528 kb on + strand, within MPMX19_05344at 16.528 kb on + strand, within MPMX19_05344at 16.528 kb on + strand, within MPMX19_05344at 16.528 kb on + strand, within MPMX19_05344at 16.528 kb on + strand, within MPMX19_05344at 16.529 kb on - strand, within MPMX19_05344at 16.529 kb on - strand, within MPMX19_05344at 16.529 kb on - strand, within MPMX19_05344at 16.529 kb on - strand, within MPMX19_05344at 16.529 kb on - strand, within MPMX19_05344at 16.744 kb on + strand, within MPMX19_05344at 16.745 kb on - strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.951 kb on + strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 16.952 kb on - strand, within MPMX19_05344at 17.102 kb on - strand, within MPMX19_05344at 17.102 kb on - strand, within MPMX19_05344at 17.102 kb on - strand, within MPMX19_05344

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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14,259 + MPMX19_05341 0.37 +3.2
14,259 + MPMX19_05341 0.37 -0.1
14,260 - MPMX19_05341 0.37 -0.5
14,320 + MPMX19_05341 0.44 +0.2
14,320 + MPMX19_05341 0.44 +0.1
14,320 + MPMX19_05341 0.44 +0.1
14,320 + MPMX19_05341 0.44 -0.2
14,320 + MPMX19_05341 0.44 -0.1
14,320 + MPMX19_05341 0.44 +0.4
14,320 + MPMX19_05341 0.44 -0.5
14,320 + MPMX19_05341 0.44 -0.6
14,320 + MPMX19_05341 0.44 +0.6
14,321 - MPMX19_05341 0.45 -0.6
14,321 - MPMX19_05341 0.45 +0.1
14,321 - MPMX19_05341 0.45 -0.4
14,321 - MPMX19_05341 0.45 +0.2
14,321 - MPMX19_05341 0.45 -0.5
14,321 - MPMX19_05341 0.45 -0.2
14,321 - MPMX19_05341 0.45 -0.7
14,321 - MPMX19_05341 0.45 -1.0
14,321 - MPMX19_05341 0.45 -0.0
14,321 - MPMX19_05341 0.45 -0.4
14,596 + MPMX19_05341 0.80 -0.8
14,596 + MPMX19_05341 0.80 -0.9
14,596 + MPMX19_05341 0.80 -1.3
14,596 + MPMX19_05341 0.80 +0.5
14,596 + MPMX19_05341 0.80 +0.7
14,597 - MPMX19_05341 0.80 +0.4
14,597 - MPMX19_05341 0.80 -1.7
14,597 - MPMX19_05341 0.80 -0.5
14,597 - MPMX19_05341 0.80 -0.9
14,597 - MPMX19_05341 0.80 +0.2
14,597 - MPMX19_05341 0.80 -0.4
14,671 + MPMX19_05341 0.90 -0.2
14,672 - MPMX19_05341 0.90 -1.8
14,672 - MPMX19_05341 0.90 -0.4
14,672 - MPMX19_05341 0.90 +0.0
14,709 + -1.8
14,709 + -0.5
14,709 + -2.2
14,709 + -0.8
14,709 + -0.5
14,709 + -1.2
14,709 + -0.4
14,709 + -0.4
14,709 + -0.7
14,709 + +1.4
14,709 + -0.1
14,710 - +0.2
14,710 - -0.1
14,710 - -2.1
14,710 - -0.4
14,710 - +0.4
14,710 - -1.7
14,710 - +0.2
14,710 - +0.1
14,710 - -0.8
14,710 - +0.5
14,749 + +0.2
14,909 + MPMX19_05342 0.29 -0.2
14,909 + MPMX19_05342 0.29 +0.8
14,909 + MPMX19_05342 0.29 -0.2
14,909 + MPMX19_05342 0.29 +0.1
14,910 - MPMX19_05342 0.29 -0.9
14,910 - MPMX19_05342 0.29 +0.3
14,942 + MPMX19_05342 0.41 +0.2
14,942 + MPMX19_05342 0.41 -0.5
14,942 + MPMX19_05342 0.41 +0.4
14,943 - MPMX19_05342 0.41 -0.8
14,943 - MPMX19_05342 0.41 +1.2
14,943 - MPMX19_05342 0.41 -0.5
15,053 + MPMX19_05342 0.81 -1.2
15,053 + MPMX19_05342 0.81 -2.1
15,053 + MPMX19_05342 0.81 +2.2
15,053 + MPMX19_05342 0.81 +0.9
15,053 + MPMX19_05342 0.81 +1.2
15,053 + MPMX19_05342 0.81 -0.7
15,053 + MPMX19_05342 0.81 -0.4
15,054 - MPMX19_05342 0.82 -1.9
15,054 - MPMX19_05342 0.82 -0.2
15,054 - MPMX19_05342 0.82 +0.8
15,180 - -1.2
15,362 + MPMX19_05343 0.11 -0.3
15,362 + MPMX19_05343 0.11 -0.6
15,363 - MPMX19_05343 0.11 +0.2
15,363 - MPMX19_05343 0.11 +1.2
15,363 - MPMX19_05343 0.11 +1.1
15,545 + MPMX19_05343 0.29 +0.8
15,545 + MPMX19_05343 0.29 -1.2
15,545 + MPMX19_05343 0.29 +0.5
15,546 - MPMX19_05343 0.29 -0.8
15,546 - MPMX19_05343 0.29 -0.0
15,546 - MPMX19_05343 0.29 -0.9
15,935 + MPMX19_05343 0.68 +0.8
15,935 + MPMX19_05343 0.68 -0.7
15,935 + MPMX19_05343 0.68 +1.5
15,935 + MPMX19_05343 0.68 +0.2
15,935 + MPMX19_05343 0.68 +1.0
15,936 - MPMX19_05343 0.68 -0.0
15,936 - MPMX19_05343 0.68 -0.2
15,936 - MPMX19_05343 0.68 -0.9
15,936 - MPMX19_05343 0.68 -0.5
16,106 + MPMX19_05343 0.85 -1.7
16,106 + MPMX19_05343 0.85 +0.1
16,106 + MPMX19_05343 0.85 +0.5
16,106 + MPMX19_05343 0.85 +0.1
16,106 + MPMX19_05343 0.85 +0.3
16,106 + MPMX19_05343 0.85 -0.9
16,106 + MPMX19_05343 0.85 -0.2
16,106 + MPMX19_05343 0.85 +0.1
16,106 + MPMX19_05343 0.85 +0.6
16,106 + MPMX19_05343 0.85 +0.2
16,106 + MPMX19_05343 0.85 +0.0
16,107 - MPMX19_05343 0.85 -0.5
16,107 - MPMX19_05343 0.85 +0.3
16,107 - MPMX19_05343 0.85 -0.7
16,107 - MPMX19_05343 0.85 -0.9
16,107 - MPMX19_05343 0.85 +0.2
16,107 - MPMX19_05343 0.85 -0.7
16,107 - MPMX19_05343 0.85 -1.7
16,107 - MPMX19_05343 0.85 -0.1
16,107 - MPMX19_05343 0.85 +0.6
16,107 - MPMX19_05343 0.85 -0.3
16,107 - MPMX19_05343 0.85 -0.4
16,107 - MPMX19_05343 0.85 +0.8
16,107 - MPMX19_05343 0.85 -0.4
16,107 - MPMX19_05343 0.85 -0.5
16,107 - MPMX19_05343 0.85 -0.4
16,107 - MPMX19_05343 0.85 -0.4
16,107 - MPMX19_05343 0.85 -0.2
16,107 - MPMX19_05343 0.85 +0.1
16,213 + -1.0
16,213 + +0.5
16,214 - -0.5
16,223 + -0.4
16,223 + -1.2
16,223 + +0.3
16,223 + +0.1
16,224 - -0.5
16,224 - +0.6
16,224 - -2.2
16,224 - -0.2
16,224 - +0.1
16,528 + MPMX19_05344 0.27 -0.5
16,528 + MPMX19_05344 0.27 -0.6
16,528 + MPMX19_05344 0.27 -0.2
16,528 + MPMX19_05344 0.27 -0.4
16,528 + MPMX19_05344 0.27 +0.7
16,528 + MPMX19_05344 0.27 +0.2
16,528 + MPMX19_05344 0.27 -1.2
16,529 - MPMX19_05344 0.27 +0.6
16,529 - MPMX19_05344 0.27 +0.5
16,529 - MPMX19_05344 0.27 -0.2
16,529 - MPMX19_05344 0.27 +0.0
16,529 - MPMX19_05344 0.27 -0.9
16,744 + MPMX19_05344 0.50 -0.5
16,745 - MPMX19_05344 0.51 +1.1
16,951 + MPMX19_05344 0.73 -1.2
16,951 + MPMX19_05344 0.73 +1.2
16,951 + MPMX19_05344 0.73 -0.1
16,951 + MPMX19_05344 0.73 -1.7
16,951 + MPMX19_05344 0.73 -0.7
16,951 + MPMX19_05344 0.73 -0.2
16,951 + MPMX19_05344 0.73 +0.3
16,951 + MPMX19_05344 0.73 +0.9
16,952 - MPMX19_05344 0.73 +0.1
16,952 - MPMX19_05344 0.73 -1.7
16,952 - MPMX19_05344 0.73 -0.5
16,952 - MPMX19_05344 0.73 -0.4
16,952 - MPMX19_05344 0.73 +0.1
16,952 - MPMX19_05344 0.73 +0.6
16,952 - MPMX19_05344 0.73 -1.7
16,952 - MPMX19_05344 0.73 +0.1
16,952 - MPMX19_05344 0.73 -1.0
16,952 - MPMX19_05344 0.73 -0.4
16,952 - MPMX19_05344 0.73 -0.9
16,952 - MPMX19_05344 0.73 -0.2
16,952 - MPMX19_05344 0.73 +0.2
16,952 - MPMX19_05344 0.73 -0.5
17,102 - MPMX19_05344 0.89 -0.7
17,102 - MPMX19_05344 0.89 -0.1
17,102 - MPMX19_05344 0.89 -0.4

Or see this region's nucleotide sequence