Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04748

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04746 and MPMX19_04747 are separated by 4 nucleotidesMPMX19_04747 and MPMX19_04748 overlap by 4 nucleotidesMPMX19_04748 and MPMX19_04749 overlap by 25 nucleotides MPMX19_04746: MPMX19_04746 - hypothetical protein, at 138,315 to 138,812 _04746 MPMX19_04747: MPMX19_04747 - hypothetical protein, at 138,817 to 139,518 _04747 MPMX19_04748: MPMX19_04748 - hypothetical protein, at 139,515 to 140,084 _04748 MPMX19_04749: MPMX19_04749 - hypothetical protein, at 140,060 to 141,484 _04749 Position (kb) 139 140 141Strain fitness (log2 ratio) -2 -1 0 1 2at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.544 kb on + strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.545 kb on - strand, within MPMX19_04746at 138.552 kb on + strand, within MPMX19_04746at 138.552 kb on + strand, within MPMX19_04746at 138.552 kb on + strand, within MPMX19_04746at 138.553 kb on - strand, within MPMX19_04746at 138.553 kb on - strand, within MPMX19_04746at 138.553 kb on - strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.699 kb on + strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 138.700 kb on - strand, within MPMX19_04746at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.581 kb on + strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.582 kb on - strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.668 kb on + strand, within MPMX19_04748at 139.669 kb on - strand, within MPMX19_04748at 139.669 kb on - strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.752 kb on + strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.753 kb on - strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.764 kb on + strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 139.765 kb on - strand, within MPMX19_04748at 140.345 kb on + strand, within MPMX19_04749at 140.346 kb on - strand, within MPMX19_04749at 140.346 kb on - strand, within MPMX19_04749at 140.346 kb on - strand, within MPMX19_04749at 140.627 kb on + strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.628 kb on - strand, within MPMX19_04749at 140.798 kb on + strand, within MPMX19_04749at 140.825 kb on + strand, within MPMX19_04749at 140.826 kb on - strand, within MPMX19_04749at 140.847 kb on - strand, within MPMX19_04749

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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138,544 + MPMX19_04746 0.46 -2.1
138,544 + MPMX19_04746 0.46 +0.8
138,544 + MPMX19_04746 0.46 +0.2
138,544 + MPMX19_04746 0.46 +1.1
138,544 + MPMX19_04746 0.46 +0.2
138,544 + MPMX19_04746 0.46 -0.2
138,544 + MPMX19_04746 0.46 +1.7
138,544 + MPMX19_04746 0.46 +0.7
138,545 - MPMX19_04746 0.46 +0.1
138,545 - MPMX19_04746 0.46 +0.7
138,545 - MPMX19_04746 0.46 +0.3
138,545 - MPMX19_04746 0.46 -0.0
138,545 - MPMX19_04746 0.46 +1.7
138,545 - MPMX19_04746 0.46 -0.1
138,545 - MPMX19_04746 0.46 -0.3
138,545 - MPMX19_04746 0.46 -0.3
138,545 - MPMX19_04746 0.46 -0.4
138,545 - MPMX19_04746 0.46 -0.9
138,545 - MPMX19_04746 0.46 +1.9
138,552 + MPMX19_04746 0.48 +0.6
138,552 + MPMX19_04746 0.48 -1.5
138,552 + MPMX19_04746 0.48 +0.1
138,553 - MPMX19_04746 0.48 +0.7
138,553 - MPMX19_04746 0.48 -1.2
138,553 - MPMX19_04746 0.48 -1.8
138,699 + MPMX19_04746 0.77 +0.2
138,699 + MPMX19_04746 0.77 -0.2
138,699 + MPMX19_04746 0.77 -0.4
138,699 + MPMX19_04746 0.77 +1.4
138,699 + MPMX19_04746 0.77 -0.1
138,699 + MPMX19_04746 0.77 +1.2
138,699 + MPMX19_04746 0.77 -1.2
138,699 + MPMX19_04746 0.77 +0.0
138,699 + MPMX19_04746 0.77 -1.3
138,700 - MPMX19_04746 0.77 -0.1
138,700 - MPMX19_04746 0.77 +0.7
138,700 - MPMX19_04746 0.77 -1.7
138,700 - MPMX19_04746 0.77 -0.5
138,700 - MPMX19_04746 0.77 +1.3
139,581 + MPMX19_04748 0.12 +0.7
139,581 + MPMX19_04748 0.12 -0.3
139,581 + MPMX19_04748 0.12 -2.0
139,581 + MPMX19_04748 0.12 -0.1
139,581 + MPMX19_04748 0.12 +0.3
139,581 + MPMX19_04748 0.12 +0.5
139,581 + MPMX19_04748 0.12 +0.1
139,582 - MPMX19_04748 0.12 -1.1
139,582 - MPMX19_04748 0.12 +0.3
139,582 - MPMX19_04748 0.12 -0.6
139,582 - MPMX19_04748 0.12 +2.3
139,668 + MPMX19_04748 0.27 -0.6
139,668 + MPMX19_04748 0.27 -0.3
139,668 + MPMX19_04748 0.27 -0.6
139,668 + MPMX19_04748 0.27 +0.1
139,668 + MPMX19_04748 0.27 +0.4
139,668 + MPMX19_04748 0.27 +0.2
139,668 + MPMX19_04748 0.27 -1.6
139,668 + MPMX19_04748 0.27 -0.3
139,669 - MPMX19_04748 0.27 -0.3
139,669 - MPMX19_04748 0.27 -0.1
139,752 + MPMX19_04748 0.42 -1.1
139,752 + MPMX19_04748 0.42 +0.4
139,752 + MPMX19_04748 0.42 +1.1
139,752 + MPMX19_04748 0.42 -0.5
139,752 + MPMX19_04748 0.42 +0.9
139,752 + MPMX19_04748 0.42 +0.3
139,752 + MPMX19_04748 0.42 -0.6
139,752 + MPMX19_04748 0.42 +0.4
139,753 - MPMX19_04748 0.42 -0.4
139,753 - MPMX19_04748 0.42 -0.5
139,753 - MPMX19_04748 0.42 +0.4
139,753 - MPMX19_04748 0.42 -1.0
139,753 - MPMX19_04748 0.42 -2.2
139,764 + MPMX19_04748 0.44 -1.8
139,764 + MPMX19_04748 0.44 +1.7
139,764 + MPMX19_04748 0.44 -0.6
139,764 + MPMX19_04748 0.44 +0.4
139,764 + MPMX19_04748 0.44 -0.7
139,765 - MPMX19_04748 0.44 +0.5
139,765 - MPMX19_04748 0.44 -0.5
139,765 - MPMX19_04748 0.44 +0.2
140,345 + MPMX19_04749 0.20 -0.4
140,346 - MPMX19_04749 0.20 +1.7
140,346 - MPMX19_04749 0.20 -1.3
140,346 - MPMX19_04749 0.20 -0.4
140,627 + MPMX19_04749 0.40 -0.0
140,628 - MPMX19_04749 0.40 +0.0
140,628 - MPMX19_04749 0.40 -1.1
140,628 - MPMX19_04749 0.40 -0.8
140,628 - MPMX19_04749 0.40 -0.3
140,628 - MPMX19_04749 0.40 -1.8
140,798 + MPMX19_04749 0.52 +0.2
140,825 + MPMX19_04749 0.54 +0.2
140,826 - MPMX19_04749 0.54 -1.6
140,847 - MPMX19_04749 0.55 -0.5

Or see this region's nucleotide sequence